| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,435,687 | T→C | intergenic (‑68/+73) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,687 | 0 | T | C | 100.0% | 50.7 / NA | 16 | intergenic (‑68/+73) | uspF/ompN | nucleotide binding filament protein/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/7); total (9/7) | |||||||||||
ATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTT > NC_000913/1435618‑1435761 | aTAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACAttttt < 1:273107/80‑1 (MQ=255) aaaaCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAAt > 2:273130/1‑81 (MQ=255) aCCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAAtt > 2:273136/1‑79 (MQ=255) tcttAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCaa < 2:273108/77‑1 (MQ=255) ttAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAagg < 2:273109/80‑1 (MQ=255) tAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAaggag > 2:273126/1‑81 (MQ=255) tAACGCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATCTAGATCAAAGGAGGAAGAATAAGCAGaaaag > 2:273135/1‑80 (MQ=255) gCCAGATGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCg > 1:273123/1‑81 (MQ=255) aTGACACTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAATGGAGGAAGAATAAGCAG‑AAAAGCCCGCCAt > 2:273132/1‑80 (MQ=255) acTTTTTGTGTAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGc < 2:273110/81‑1 (MQ=255) gtgtAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCag < 1:273111/80‑1 (MQ=255) tgtAATGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCagg < 2:273112/80‑1 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 1:273134/1‑81 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 1:273151/1‑81 (MQ=255) aaTGACGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAggagga > 2:273127/1‑81 (MQ=255) aCGGAGCTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGAttt < 1:273113/80‑1 (MQ=255) | ATAAAACCTCCTGTTTTAGTATCCGCATAAAGTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTT > NC_000913/1435618‑1435761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |