| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,471,263 | G→A | pseudogene (745/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,471,263 | 0 | G | A | 94.4% | 54.1 / ‑3.7 | 18 | pseudogene (745/3495 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (13/4); total (14/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
GGTAGGGATGGCTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTGGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGCGTGTGCCAATCG > NC_000913/1471187‑1471340 | ggTAGGGATGGCTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGt > 1:278524/1‑79 (MQ=255) gTAGGGATGGCTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTc < 2:278502/79‑1 (MQ=255) gggATGGCTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGc < 2:278503/80‑1 (MQ=255) cTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTtat > 2:278518/1‑80 (MQ=255) cTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTtat > 1:278535/1‑80 (MQ=255) gAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATgg > 1:278517/1‑80 (MQ=255) gAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATgg > 1:278525/1‑80 (MQ=255) tACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTGGTCAGGCGTTTTATAACGATGGCACAGGaa > 1:278526/1‑80 (MQ=255) gACCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTAt > 1:278512/1‑81 (MQ=255) aCCAGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATg > 1:278528/1‑81 (MQ=255) aGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTa > 2:278545/1‑81 (MQ=255) aGACGGGTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTa > 1:278520/1‑81 (MQ=255) ggTGTTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGTCACAGGAACAATTGTTAACTATGGTACAATc > 1:278527/1‑81 (MQ=255) gtgtTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCt < 2:278504/81‑1 (MQ=255) gtTATCAATATCAATGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTg > 1:278534/1‑80 (MQ=255) atcaatGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGc > 2:278529/1‑81 (MQ=255) tcaatGTTGGTACTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGc < 1:278505/80‑1 (MQ=255) aCTAGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGCGTGTGCCAATCg > 2:278537/1‑81 (MQ=255) | GGTAGGGATGGCTGTTTATGAGCATGGTACTGCTATCAACGACCAGACGGGTGTTATCAATATCAATGTTGGTACTGGTCAGGCGTTTTATAACGATGGCACAGGAACAATTGTTAACTATGGTACAATCTGCACTTTCGGCGTGTGCCAATCG > NC_000913/1471187‑1471340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |