| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,533,437 | A→G | Y139H (TAC→CAC) | yddH ← | flavin reductase‑like protein YddH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,533,437 | 0 | A | G | 95.2% | 63.2 / ‑4.0 | 21 | Y139H (TAC→CAC) | yddH | flavin reductase‑like protein YddH |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (10/10); total (11/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
CAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTATTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGACCAGAGGC > NC_000913/1533362‑1533510 | caAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGttctt > 2:287418/1‑81 (MQ=255) cTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTg < 1:287393/81‑1 (MQ=255) cAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCa < 1:287394/81‑1 (MQ=255) gACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAgg > 1:287428/1‑81 (MQ=255) aTACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCa < 2:287395/81‑1 (MQ=255) aCCCGTGCGTCTGCCGCTGCTGATACTAATTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAAt > 2:287419/1‑81 (MQ=255) ccGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCg < 1:287396/81‑1 (MQ=255) tGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACtccat > 2:287426/1‑81 (MQ=255) ccGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACtccatcc < 2:287397/81‑1 (MQ=255) ctgATACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGc > 2:287420/1‑79 (MQ=255) aTACTACTTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGa > 2:287422/1‑80 (MQ=255) ctactTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACAtt < 1:287399/81‑1 (MQ=255) ctactTCGCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACAtt < 1:287398/81‑1 (MQ=255) gCCAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTc < 1:287400/81‑1 (MQ=255) ccAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTc > 1:287423/1‑80 (MQ=255) ccAAACAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTc > 2:287427/1‑80 (MQ=255) aaaCAGCGTGTCGTATTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGAc > 2:287425/1‑81 (MQ=255) aaCAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGAc > 1:287434/1‑80 (MQ=255) aaCAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGAc > 2:287432/1‑80 (MQ=255) cAGCGTGTCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGACCag < 2:287401/81‑1 (MQ=255) cgtgtcgtgtTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGACCAGAgg > 2:287424/1‑81 (MQ=255) gtgtCGTGTTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGACCAGAGGc < 1:287402/81‑1 (MQ=255) | CAAACTGCCAGCGGCCTTCGACAAATACCCGTGCGTCTGCCGCTGCTGATACTACTTCGCCAAACAGCGTGTCGTATTCTTCTTGCGCAGAAGTCGCAGGTAGCAATCGACACTCCATCCACGCCAGACATTTTTCCTCGACCAGAGGC > NC_000913/1533362‑1533510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |