Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,706,464	A→T	K39N (AAA→AAT)	rsxB →	SoxR [2Fe‑2S] reducing system protein RsxB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,706,464	0	A	T	100.0%	75.8 / NA	22	K39N (AAA→AAT)	rsxB	SoxR [2Fe‑2S] reducing system protein RsxB
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (11/11);  total (11/11)

GGCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAAAATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGC  >  NC_000913/1706390‑1706535                                                                           |                                                                        ggCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGAc                                                                   <  2:310795/81‑1 (MQ=255)           ttGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTAc                                                         >  2:310834/1‑81 (MQ=255)               cgcCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCg                                                       >  2:310821/1‑79 (MQ=255)                   aTTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGc                                                 >  1:310829/1‑81 (MQ=255)                    ttCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGcc                                                <  2:310796/81‑1 (MQ=255)                            tATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGt                                        >  2:310814/1‑81 (MQ=255)                             aTGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGt                                        <  2:310797/80‑1 (MQ=255)                              tGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCa                                      <  2:310798/81‑1 (MQ=255)                                     cgccgTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGt                               <  2:310799/81‑1 (MQ=255)                                       ccgTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTa                             >  1:310831/1‑81 (MQ=255)                                              gCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCgg                       <  1:310800/80‑1 (MQ=255)                                              gCGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGc                      >  2:310828/1‑81 (MQ=255)                                               cGGTGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCt                     <  1:310801/81‑1 (MQ=255)                                                  tGGAAGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTc                  >  1:310830/1‑81 (MQ=255)                                                     aaGACGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGcc               >  2:310827/1‑81 (MQ=255)                                                        aCGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCt            <  1:310802/81‑1 (MQ=255)                                                         cGATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTa           <  1:310803/81‑1 (MQ=255)                                                          gATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAc          >  1:310841/1‑81 (MQ=255)                                                          gATCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAc          >  2:310835/1‑81 (MQ=255)                                                            tCCGGTCGTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTAcgc        <  2:310804/81‑1 (MQ=255)                                                                gTCGTTGAGAATATTGACGAAATCTTACCGCGGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGaa    <  2:310805/81‑1 (MQ=255)                                                                   gTTGAGAATATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGc  >  2:310826/1‑80 (MQ=255)                                                                           |                                                                        GGCCTGGCGTTTGGCGCCATTCTGGGTTATGCCTCCCGCCGTTTTGCGGTGGAAGACGATCCGGTCGTTGAGAAAATTGACGAAATCTTACCGCAGAGCCAGTGTGGTCAGTGCGGTTATCCCGGCTGTCGCCCCTACGCGGAAGC  >  NC_000913/1706390‑1706535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑