| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,718,381 | T→C | K5K (AAA→AAG) | mliC ← | inhibitor of c‑type lysozyme, putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,718,381 | 0 | T | C | 100.0% | 39.9 / NA | 13 | K5K (AAA→AAG) | mliC | inhibitor of c‑type lysozyme, putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/5); total (8/5) | |||||||||||
GGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACG > NC_000913/1718306‑1718456 | ggTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGctttt < 2:312654/80‑1 (MQ=255) tttGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCa > 1:312687/1‑81 (MQ=255) aaCCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATccc > 1:312681/1‑80 (MQ=255) gATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACttt > 1:312679/1‑81 (MQ=255) aTTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACtt < 1:312655/79‑1 (MQ=255) gcTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTgg < 2:312656/81‑1 (MQ=255) aGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAggg > 1:312684/1‑80 (MQ=255) cGGAGAGAAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAAt < 2:312657/81‑1 (MQ=255) gagagaAGGACCGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATAc < 2:312658/81‑1 (MQ=255) ccGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTa < 1:312659/81‑1 (MQ=255) cGGCAAAATGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTaa > 2:312689/1‑81 (MQ=255) tGATAATTAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTcc > 1:312692/1‑79 (MQ=255) ttAACAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTaa > 2:312683/1‑81 (MQ=255) aaCAGCTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACg > 2:312680/1‑81 (MQ=255) | GGTTTGCATGCGCTCAACCAGCTGATTAAAGGCGCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACG > NC_000913/1718306‑1718456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |