| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,747,237 | A→G | D36G (GAC→GGC) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,747,237 | 0 | A | G | 94.4% | 53.6 / ‑5.7 | 18 | D36G (GAC→GGC) | ydhS | FAD/NAD(P) binding domain‑containing protein YdhS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (8/9); minor base T (1/0); total (9/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAATATTGCCAGTATT > NC_000913/1747161‑1747310 | ccTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAg < 1:317014/81‑1 (MQ=255) tACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGTCGAGGc > 2:317031/1‑81 (MQ=255) gATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGgtgt > 2:317027/1‑81 (MQ=255) cacCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTc < 1:317015/76‑1 (MQ=255) cacCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGAt < 2:317016/81‑1 (MQ=255) aTTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCAt < 2:317017/80‑1 (MQ=255) tctcGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATa > 1:317033/1‑79 (MQ=255) aCAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAgg > 1:317030/1‑80 (MQ=255) cAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAg < 1:317018/78‑1 (MQ=255) cAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAg < 1:317019/78‑1 (MQ=255) cAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGa > 2:317029/1‑80 (MQ=255) acaaACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTc < 1:317020/81‑1 (MQ=255) cACTTTCTATTTCTATCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAat < 1:317021/79‑1 (MQ=255) ttctatttctatCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCt > 2:317042/1‑81 (MQ=255) ctatCTTCGAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAata > 1:317034/1‑81 (MQ=255) gAGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAATATTGCCAGt < 1:317022/81‑1 (MQ=255) aGCAGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAATATTGCCAGTa > 1:317048/1‑81 (MQ=255) aGGCTGGCGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAATATTGCCAGTAtt > 1:317035/1‑80 (MQ=255) | CCTACGGGGATCTACACCTTATTCTCGCTTCTACAGCAACAAACTCCACTTTCTATTTCTATCTTCGAGCAGGCTGACGAGGCCGGTGTCGGGATGCCATACAGTGATGAGGAAAACTCAAAAATGATGCTGGCAAATATTGCCAGTATT > NC_000913/1747161‑1747310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |