| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,836,555 | T→C | V161V (GTT→GTC) | ynjB → | putative ABC transporter periplasmic binding protein YnjB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,836,555 | 0 | T | C | 95.2% | 61.5 / ‑3.7 | 21 | V161V (GTT→GTC) | ynjB | putative ABC transporter periplasmic binding protein YnjB |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (13/7); total (13/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
CTGTGCCGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTTACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCC > NC_000913/1836485‑1836629 | cTGTGCCGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAg < 2:330071/80‑1 (MQ=255)cTGTGCCGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGc > 2:330105/1‑81 (MQ=255) gtgCCGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGcca > 2:330111/1‑81 (MQ=255) ccGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGccacca < 2:330072/81‑1 (MQ=255) acaAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAAc > 1:330122/1‑81 (MQ=255) ggTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAAcgccg > 2:330091/1‑81 (MQ=255) aaTCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCt < 2:330073/81‑1 (MQ=255) tCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTa < 1:330074/81‑1 (MQ=255) gcggcgCACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTg > 1:330110/1‑81 (MQ=255) gcgcACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCt > 1:330129/1‑80 (MQ=255) gcgcACAACTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCt > 2:330130/1‑80 (MQ=255) cTGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAAt > 2:330132/1‑81 (MQ=255) tGACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATc > 2:330120/1‑81 (MQ=255) gACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATcc > 2:330108/1‑81 (MQ=255) gACGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATcc > 2:330118/1‑81 (MQ=255) aCGTTTATCGCCCGCCGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATc < 1:330075/79‑1 (MQ=255) tttATCGCCCGCCGCGATGTTACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGc < 1:330076/81‑1 (MQ=255) gcccgccGCGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGtt < 2:330077/81‑1 (MQ=255) cgccgcGATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTAcc > 2:330115/1‑81 (MQ=255) gcgATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATc > 2:330113/1‑81 (MQ=255) cgATGTCACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATcc < 2:330078/81‑1 (MQ=255) | CTGTGCCGACACAAGGTGCGGAATCGCCCTGGGGCGGCGCACAACTGACGTTTATCGCCCGCCGCGATGTTACGCCACAGCCACCACAAACGCCGCAAGCCTTACTGGAGTTTGCTAAAGCCAATCCCGGCACGGTTACCTATCC > NC_000913/1836485‑1836629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |