| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,024,312 | T→C | D115D (GAT→GAC) | rcsA → | DNA‑binding transcriptional activator RcsA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,024,312 | 0 | T | C | 100.0% | 55.3 / NA | 17 | D115D (GAT→GAC) | rcsA | DNA‑binding transcriptional activator RcsA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/8); total (9/8) | |||||||||||
CATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGATATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATCATTGA > NC_000913/2024235‑2024382 | cATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATc > 2:360065/1‑81 (MQ=255) aTTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATcc > 1:360061/1‑81 (MQ=255) tCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCt > 2:360068/1‑81 (MQ=255) tATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGTGATATTCTg > 2:360062/1‑80 (MQ=255) gTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGaaaa > 1:360071/1‑79 (MQ=255) gAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAgaga < 1:360043/81‑1 (MQ=255) gATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCt < 2:360044/80‑1 (MQ=255) aTCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTc < 2:360045/80‑1 (MQ=255) aGTTCTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGttt > 2:360067/1‑81 (MQ=255) cTAAATCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTa < 1:360046/80‑1 (MQ=255) aaTCGATTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAata > 2:360069/1‑81 (MQ=255) aTTAAACCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCg < 2:360047/81‑1 (MQ=255) aCCGGAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGtt < 2:360048/81‑1 (MQ=255) ggAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATc < 2:360049/81‑1 (MQ=255) gAATCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATCa > 1:360072/1‑81 (MQ=255) aaTCTCTCGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATCAt > 2:360076/1‑81 (MQ=255) tcGACGACATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATCATTGa < 1:360050/78‑1 (MQ=255) | CATTTTGATGAATATCTATTGGTCAGAAAAAATTTATTGATCAGTTCTAAATCGATTAAACCGGAATCTCTCGACGATATCCTTGGCGATATTCTGAAAAAAGAGACAACGATAACCTCGTTTTTAAATATGCCGACGTTATCATTGA > NC_000913/2024235‑2024382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |