| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,269,575 | T→C | intergenic (+8/‑404) | lpxT → / → mepS | Kdo2‑lipid A phosphotransferase/peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,269,575 | 0 | T | C | 100.0% | 48.2 / NA | 15 | intergenic (+8/‑404) | lpxT/mepS | Kdo2‑lipid A phosphotransferase/peptidoglycan DD‑endopeptidase/peptidoglycan LD‑carboxypeptidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (3/12); total (3/12) | |||||||||||
AGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCTTTCATCTATCGAA > NC_000913/2269499‑2269648 | aGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAAtt < 1:401739/81‑1 (MQ=255) tCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAAcat < 2:401740/81‑1 (MQ=255) aTCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAACATCATCAg < 1:401741/80‑1 (MQ=255) aCCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGtt < 1:401743/81‑1 (MQ=255) aCCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGtt < 2:401742/81‑1 (MQ=255) aCCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGt < 1:401744/80‑1 (MQ=255) aGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCt < 2:401745/81‑1 (MQ=255) aaacaTTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATgcg > 2:401759/1‑80 (MQ=255) aacaTTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCa < 1:401746/81‑1 (MQ=255) caTTTCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCAcc < 2:401747/81‑1 (MQ=255) tttCCAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGt < 2:401748/81‑1 (MQ=255) cAAAACAAATAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCtt < 2:401749/81‑1 (MQ=255) aTAACTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCTTTCATCTAt < 1:401750/81‑1 (MQ=255) aaCTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCTTTCATCTATc > 2:401762/1‑80 (MQ=255) cTCACAGCAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCTTTCATCTATCGaa > 2:401760/1‑81 (MQ=255) | AGTGATCGATTAATCACCTTTTTTGACAAATCACTACCAGGAAAAAACAAACATTTCCAAAACAAATAACTCACAGTAATTAACATCATCAGGGTTATTTTTATAGTGAGGATAATCCTGATGATGCGCACCGTGCTTTCATCTATCGAA > NC_000913/2269499‑2269648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |