| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,349,465 | A→G | V3A (GTT→GCT) | inaA ← | putative lipopolysaccharide kinase InaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,349,465 | 0 | A | G | 100.0% | 64.1 / NA | 20 | V3A (GTT→GCT) | inaA | putative lipopolysaccharide kinase InaA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (4/16); total (4/16) | |||||||||||
TTACGGCGATAGTTAGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAACTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGAAAATCTTAATGA > NC_000913/2349387‑2349540 | ttACGGCGATAGTTAGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCt < 2:416872/81‑1 (MQ=255) ggCGATAGTTAGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCa < 1:416873/81‑1 (MQ=255) tAGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATc > 1:416914/1‑81 (MQ=255) aGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATc < 2:416874/80‑1 (MQ=255) ggCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGc < 1:416875/81‑1 (MQ=255) cccAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCAtttt < 2:416876/81‑1 (MQ=255) tCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTttatta < 2:416877/81‑1 (MQ=255) cGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTaa > 1:416915/1‑81 (MQ=255) ctctGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGAc < 1:416878/81‑1 (MQ=255) gTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAAt > 2:416909/1‑80 (MQ=255) ttGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGa < 2:416879/81‑1 (MQ=255) cccACCAGTGATTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACt < 1:416880/80‑1 (MQ=255) aTTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGtt < 2:416882/80‑1 (MQ=255) aTTAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTa < 2:416881/81‑1 (MQ=255) ttAAATTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTAc > 1:416912/1‑81 (MQ=255) aaaTTCGTCGTACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTAcc < 1:416883/80‑1 (MQ=255) gtcgtACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGaa < 2:416884/81‑1 (MQ=255) tACTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGAAAATc < 1:416885/81‑1 (MQ=255) cTTTGCTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGAAAATCtt < 1:416886/81‑1 (MQ=255) cTGAAGCTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGAAAATCTTAATGa < 1:416887/81‑1 (MQ=255) | TTACGGCGATAGTTAGGCTCTTCAACCCAGTCGCCCTCTGTTGCCCACCAGTGATTAAATTCGTCGTACTTTGCTGAAACTGCCATACCCTATCGCCTGTCATTTTTATTAACGACAATGACTATAGGTGGTTACCTGAGGAAAATCTTAATGA > NC_000913/2349387‑2349540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |