| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,759,898 | G→A | C305Y (TGC→TAC) | yfjI → | CP4‑57 prophage; protein YfjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,759,898 | 0 | G | A | 100.0% | 48.9 / NA | 17 | C305Y (TGC→TAC) | yfjI | CP4‑57 prophage; protein YfjI |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/5); total (12/5) | |||||||||||
CCGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGAT > NC_000913/2759825‑2759973 | ccGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCg < 1:497079/80‑1 (MQ=255) gTATTTCACCAACGTCTTATAGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATtc < 1:497080/81‑1 (MQ=255) tttCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATTctct < 1:497081/81‑1 (MQ=255) aTGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATTCTCTgcagaagcagaa < 1:497082/78‑1 (MQ=255) tGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGAt > 2:497100/1‑81 (MQ=255) aaTGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGaa > 2:497094/1‑81 (MQ=255) gagaGCATCATTAAAATTAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTc > 2:497095/1‑81 (MQ=255) aaaTTAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTc < 2:497083/80‑1 (MQ=255) aaTTAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTc > 2:497103/1‑79 (MQ=255) tAATGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGt > 1:497102/1‑80 (MQ=255) aaTGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGt > 2:497115/1‑79 (MQ=255) aTGAAAATAATCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGt > 1:497108/1‑78 (MQ=25) taatCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAAt > 2:497084/1‑78 (MQ=21) aatCGCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATgag > 2:497110/1‑80 (MQ=21) gCATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGa > 2:497112/1‑81 (MQ=17) cATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGAt > 1:497111/1‑81 (MQ=14) cATCTACCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGAt > 1:497104/1‑81 (MQ=14) | CCGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGAT > NC_000913/2759825‑2759973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |