| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,773,272 | C→A | intergenic (‑90/‑46) | yfjV ← / → yfjW | CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment/CP4‑57 prophage; uncharacterized protein YfjW |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,773,272 | 0 | C | A | 93.3% | 42.8 / ‑3.1 | 15 | intergenic (‑90/‑46) | yfjV/yfjW | CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment/CP4‑57 prophage; uncharacterized protein YfjW |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (6/8); total (7/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
TCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTA > NC_000913/2773197‑2773347 | tCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTAt > 2:499540/1‑80 (MQ=255) gTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTATGa < 2:499522/80‑1 (MQ=255) gATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTa < 1:499523/80‑1 (MQ=255) ccATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTaaa < 1:499524/81‑1 (MQ=255) aaCACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCtt > 2:499537/1‑81 (MQ=255) gAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGAt > 1:499538/1‑81 (MQ=255) aGTAATGAAATTGGTTGCTAGAAAGTCGATGGTTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGAtt < 2:499525/81‑1 (MQ=255) aaTGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGc > 2:499543/1‑81 (MQ=255) ggTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCttt > 1:499542/1‑81 (MQ=255) gTTGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCtttt < 1:499526/81‑1 (MQ=255) tGCTAGAAAGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTg > 2:499545/1‑80 (MQ=255) aaaGTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAg > 2:499544/1‑80 (MQ=255) gTCGATGATTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAag < 2:499527/81‑1 (MQ=255) atTTGTTGAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAAtt < 1:499528/81‑1 (MQ=255) gttgAGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTa < 2:499529/80‑1 (MQ=255) | TCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGTTGCTAGAAAGTCGATGATTTGTTGCGTATGATTAAAAATCAACCTTAAAGGCTTTATACATGGATTTGCTATGGCTTTTGTATCAGAAAGAGAAATTGTA > NC_000913/2773197‑2773347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |