| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,787,520 | C→T | pseudogene (1124/2253 nt) | ygaQ → | putative uncharacterized protein YgaQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,787,520 | 0 | C | T | 100.0% | 51.9 / NA | 16 | pseudogene (1124/2253 nt) | ygaQ | putative uncharacterized protein YgaQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (7/9); total (7/9) | |||||||||||
GGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCG > NC_000913/2787443‑2787595 | ggTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTaaa < 2:501680/81‑1 (MQ=255) ttttGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAg < 2:501681/81‑1 (MQ=255) aaGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTa > 1:501714/1‑78 (MQ=255) aaGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTa > 2:501719/1‑78 (MQ=255) aaGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAg < 1:501682/81‑1 (MQ=255) aTCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATa < 1:501683/81‑1 (MQ=255) tCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATaa < 1:501684/81‑1 (MQ=255) tCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATaa > 1:501701/1‑81 (MQ=255) aaGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAgg < 2:501685/81‑1 (MQ=255) aaGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAg > 2:501710/1‑80 (MQ=255) gTAAACAAATCCATCCAGAAGATATACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAAt > 1:501712/1‑81 (MQ=255) atatACATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaa < 2:501686/81‑1 (MQ=255) taCATCTCACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaag < 1:501687/81‑1 (MQ=255) aTCTCACTGTAAAAGACTTCGAAGCAAGTAAGGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaaa < 2:501688/81‑1 (MQ=255) tctcACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTaaaagaa > 2:501716/1‑79 (MQ=255) cACTGTAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCg > 1:501713/1‑81 (MQ=255) | GGTTTTGATTCCATTCATTAAAGATCCAGTAACAAAAGAACGTAAACAAATCCATCCAGAAGATATACATCTCACTGCAAAAGACTTCGAAGCAAGTAAAGATAACATCTCTAAGGATGAATGGGAAAACCTCCATGCATTAAAAGAAAAGCG > NC_000913/2787443‑2787595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |