| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 314,142 | T→A | intergenic (‑337/‑215) | ykgP ← / → eaeH | putative oxidoreductase/putative porin domain‑containing protein EaeH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 314,142 | 0 | T | A | 90.0% | 26.5 / ‑3.1 | 10 | intergenic (‑337/‑215) | ykgP/eaeH | putative oxidoreductase/putative porin domain‑containing protein EaeH |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base A (5/4); total (6/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAGAGTAAGAAATATAACTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAATTTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATA > NC_000913/314085‑314209 | cGCAGAGTAAGAAATATAACTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAatat > 2:72308/1‑80 (MQ=255) gagTAAGAAATATAACTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATcc > 1:72306/1‑81 (MQ=255) ataACTTAGGTATCTATTTAATGACTTGCACAAAAAGCTAAAATTTCCCCCCATAAATAAAAATATAATCCCGCGCCCAac > 1:72305/1‑81 (MQ=255) ataACTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAac > 2:72303/1‑80 (MQ=255) aCTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAaccac < 1:72290/80‑1 (MQ=255) tATTTAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGc > 2:72316/1‑81 (MQ=255) tAATGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCtat < 2:72291/80‑1 (MQ=255) aTGACTTGCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAgg > 2:72313/1‑81 (MQ=255) gCACAAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTgg < 2:72292/80‑1 (MQ=255) acaAAAAGCT‑AAAATTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGata < 1:72293/81‑1 (MQ=255) | CGCAGAGTAAGAAATATAACTTAGGTATCTATTTAATGACTTGCACAAAAAGCT‑AAATTTTCCCCCATAAATAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATA > NC_000913/314085‑314209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |