| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,028,232 | C→A | A371D (GCT→GAT) | ghxQ → | guanine/hypoxanthine transporter GhxQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,028,232 | 0 | C | A | 96.9% | 110.9 / ‑7.2 | 32 | A371D (GCT→GAT) | ghxQ | guanine/hypoxanthine transporter GhxQ |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (21/10); minor base T (0/1); total (21/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGACGCTATGGC > NC_000913/3028156‑3028307 | gTGGGGGCGTTATTCCTGTTAATTCTGTTTATATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGatct < 2:553773/80‑1 (MQ=255) gTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACg > 2:553828/1‑80 (MQ=255) gTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACg > 1:553811/1‑80 (MQ=255) gTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGt < 1:553774/81‑1 (MQ=255) aTTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAgg > 2:553807/1‑81 (MQ=255) aTTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAg < 1:553775/80‑1 (MQ=255) ccTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGttt > 2:553814/1‑81 (MQ=255) ttAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGTTCTGATGTACGTAGGTTTGCt < 1:553776/80‑1 (MQ=255) aaTTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGac > 2:553821/1‑80 (MQ=255) aaTTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGac > 1:553829/1‑80 (MQ=255) aTTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGacg > 1:553831/1‑79 (MQ=255) ttCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGt > 1:553815/1‑81 (MQ=255) cTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGtt > 2:553817/1‑80 (MQ=255) tttttATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAg > 1:553809/1‑80 (MQ=255) ttATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAAc > 2:553827/1‑81 (MQ=255) cGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGa < 1:553777/81‑1 (MQ=255) cTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAg < 2:553778/81‑1 (MQ=255) gTCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCt > 2:553842/1‑81 (MQ=255) tCATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTg < 2:553779/81‑1 (MQ=255) cATTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTg > 2:553818/1‑80 (MQ=255) aTTTTTGATCCCTGGTTACGCCACTGCACCCGATCTGACGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGa > 2:553816/1‑81 (MQ=255) tttttGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGAt > 2:553830/1‑81 (MQ=255) ttGATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGAttt > 1:553820/1‑80 (MQ=255) gATCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCaa > 2:553804/1‑81 (MQ=255) aTCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAAt > 2:553843/1‑81 (MQ=255) aTCCCTGGTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAAt > 1:553835/1‑81 (MQ=255) ggTTACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGAttt > 1:553839/1‑80 (MQ=255) ttACGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTAt < 1:553780/81‑1 (MQ=255) aCGCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTAtt < 1:553781/80‑1 (MQ=255) gCCACTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGAc < 2:553782/81‑1 (MQ=255) aCTGCACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGACGCt < 1:553783/81‑1 (MQ=255) cACCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGACGCTAtg < 2:553784/80‑1 (MQ=255) aCCCGATCTGATGTACGTAGGTTTGCTGACGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGACGCTAtggc > 1:553826/1‑81 (MQ=255) | GTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCTGGATTTCAATGATTTTATTGACGCTATGGC > NC_000913/3028156‑3028307 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |