| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,360,842 | T→C | intergenic (+226/‑334) | gltD → / → gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,360,842 | 0 | T | C | 100.0% | 55.8 / NA | 17 | intergenic (+226/‑334) | gltD/gltF | glutamate synthase subunit GltD/periplasmic protein GltF |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (4/13); total (4/13) | |||||||||||
ATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAAC > NC_000913/3360767‑3360917 | atgaGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTc < 1:634945/78‑1 (MQ=255) tGAAGCACATCAAGCAATTTCTCATTTACAGTCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGc > 1:634969/1‑80 (MQ=255) gAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTa > 2:634963/1‑81 (MQ=255) aaGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTAt > 1:634971/1‑81 (MQ=255) aGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTAtt < 2:634946/81‑1 (MQ=255) gCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTc < 2:634947/81‑1 (MQ=255) caTCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGt < 1:634948/81‑1 (MQ=255) aaGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCtt < 1:634949/80‑1 (MQ=255) cAATGTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCa < 2:634950/81‑1 (MQ=255) aTTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTa < 2:634951/81‑1 (MQ=255) aCAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAAt < 1:634952/80‑1 (MQ=255) tCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGtct < 2:634953/81‑1 (MQ=255) ttAACACCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACaaa < 1:634954/81‑1 (MQ=255) acacCTCTGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAata < 1:634955/81‑1 (MQ=255) ctctGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGaa < 1:634956/81‑1 (MQ=255) tGACAATACCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAat < 1:634957/79‑1 (MQ=255) aCCGACTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAAc > 2:634974/1‑81 (MQ=255) | ATGAGTGAAGCACATCAAGCAATTTCTCATTTACAATCCGTCTCAATTACTTGTTAACACCTCTGACAATACCGATTCTGCAAGCTATTCAGTCTTTTCATTCCATGTAAATTGTCTCGATATTAATATACAAAATATGAATATAAAAAAC > NC_000913/3360767‑3360917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |