| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,251,224 | C→T | pseudogene (522/1581 nt) | yjbI → | pentapeptide repeats‑containing protein YjbI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,251,224 | 0 | C | T | 100.0% | 46.8 / NA | 14 | pseudogene (522/1581 nt) | yjbI | pentapeptide repeats‑containing protein YjbI |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (5/9); total (5/9) | |||||||||||
GCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGT > NC_000913/4251147‑4251299 | gCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGAt > 1:869680/1‑81 (MQ=255) cAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGa < 1:869651/79‑1 (MQ=255) gTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGc < 2:869652/81‑1 (MQ=255) aTGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAata > 1:869675/1‑81 (MQ=255) tCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATAtt < 1:869654/80‑1 (MQ=255) tCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATAtt < 2:869653/80‑1 (MQ=255) tatTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCtt > 2:869682/1‑80 (MQ=255) tGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCTTGATACAGtt < 2:869655/81‑1 (MQ=255) gACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCTTGATACAGTTGACt > 1:869677/1‑81 (MQ=255) cGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCTTGATACAGTTGACTtc < 2:869656/81‑1 (MQ=255) acacAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCg > 2:869667/1‑79 (MQ=255) aTGTGATTTTTATCAAAGCGAGTGGTGAATGTGTTGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTc < 2:869657/81‑1 (MQ=255) aaTGTGTTGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGaa < 1:869658/80‑1 (MQ=255) tgtgTTGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGt < 1:869659/81‑1 (MQ=255) | GCAATAGTTGATAATGTCATATTTAGATGTCGACGTTTACACAATGTGATTTTTATCAAAGCGAGTGGTGAATGTGTCGATTTCAGCAAAAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGT > NC_000913/4251147‑4251299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |