| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,602,042 | A→G | I19T (ATT→ACT) | yjjB ← | putative succinate exporter YjjB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,602,042 | 0 | A | G | 95.3% | 137.6 / ‑3.9 | 43 | I19T (ATT→ACT) | yjjB | putative succinate exporter YjjB |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (26/15); total (27/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAATGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATC > NC_000913/4601969‑4602115 | cGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTggcggc > 1:955672/1‑81 (MQ=255)cGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTggcggc > 1:955759/1‑81 (MQ=255) gAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTggcggc > 2:955735/1‑80 (MQ=255) gAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTggcggc > 1:955683/1‑80 (MQ=255) aGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTggcggc > 1:955686/1‑79 (MQ=255) ccAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAg > 2:955693/1‑80 (MQ=255) ccAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAATGGCGGCGAg > 1:955696/1‑80 (MQ=255) cAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGa > 2:955699/1‑81 (MQ=255) aaGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGAt > 2:955720/1‑81 (MQ=255) agcagcGCACACCAGCGTAACGCCCGCACGGGAACGGTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGAt > 1:955710/1‑80 (MQ=255) cagcGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCa > 2:955723/1‑80 (MQ=255) cacaCCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCt < 2:955648/81‑1 (MQ=255) acacCAGCGTAACGCCCGCACGGGAACGTTGGACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTg < 2:955649/81‑1 (MQ=255) acacCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTg > 1:955703/1‑81 (MQ=255) gCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCaa > 1:955708/1‑81 (MQ=255) cGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAAc < 2:955650/81‑1 (MQ=255) gTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACg > 1:955689/1‑81 (MQ=255) aCGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCt < 2:955651/80‑1 (MQ=255) aCGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCt > 2:955704/1‑80 (MQ=255) cGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTaa < 2:955652/81‑1 (MQ=255) gCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTaa > 1:955701/1‑80 (MQ=255) ccGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTaa > 1:955706/1‑78 (MQ=255) cACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGaaa < 2:955653/81‑1 (MQ=255) agcGGGAAAGTTGAACGCCACAGCAAAGCCGACCGCACGAATGGCGGCGAGGATCATATCCTGCGCCAACGAGAACGGaaa < 2:1052727/79‑1 (MQ=255) cGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAAtt > 1:955707/1‑81 (MQ=255) gggAACGTTGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTc < 1:955654/81‑1 (MQ=255) ttGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATcaca > 2:955724/1‑81 (MQ=255) tGAACACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCacac > 1:955721/1‑81 (MQ=255) aaCACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACAccc < 2:955656/81‑1 (MQ=255) aaCACCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACAcc < 2:955655/80‑1 (MQ=255) acacCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCa < 1:955657/81‑1 (MQ=255) acacCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCa < 1:955658/81‑1 (MQ=255) acacCATCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCa > 2:955709/1‑81 (MQ=255) aTCGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCcgc < 1:955659/81‑1 (MQ=255) cGCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCcgcg > 1:955732/1‑80 (MQ=255) gCAAAGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCcgcg > 1:955712/1‑79 (MQ=255) aaaGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGc > 2:955715/1‑81 (MQ=255) aaGCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGcc < 2:955660/81‑1 (MQ=255) gCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGcccc > 2:955718/1‑81 (MQ=255) gCCGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGcccc > 1:955728/1‑81 (MQ=255) cGACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGccccc > 2:955714/1‑80 (MQ=255) gACCGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCaa < 2:955661/81‑1 (MQ=255) cGCAGGAGTGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATc < 1:955662/81‑1 (MQ=255) | CGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAGGAATGGCGGCGAGGATCATATCCTGCGCCAACGCTAACAGAAATTCGATCACACCCATCCGCGTAGCCCCCAAATC > NC_000913/4601969‑4602115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |