| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 558,897 | G→A | intergenic (+143/‑77) | sfmA → / → sfmC | putative fimbrial protein SfmA/putative fimbrial chaperone SfmC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 558,897 | 0 | G | A | 100.0% | 54.4 / NA | 16 | intergenic (+143/‑77) | sfmA/sfmC | putative fimbrial protein SfmA/putative fimbrial chaperone SfmC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/7); total (9/7) | |||||||||||
AGCGGTATGGTGGCAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATGTGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGCGTAT > NC_000913/558820‑558968 | aGCGGTATGGTGGCAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATatgt < 2:123585/81‑1 (MQ=255) tATGGTGGTAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTaa < 2:123586/81‑1 (MQ=255) ggtggCAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGa > 1:123616/1‑80 (MQ=255) gCAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCa < 1:123587/81‑1 (MQ=255) aaTGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCaaa < 2:123588/81‑1 (MQ=255) aTGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAg > 2:123617/1‑81 (MQ=255) tGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAGc < 1:123589/81‑1 (MQ=255) tAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCa < 1:123590/80‑1 (MQ=255) aTCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCAATCa < 2:123591/81‑1 (MQ=255) gCTTTATTAAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAg > 1:123613/1‑81 (MQ=255) attaAATGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCATTATATTCCTTATTTTTGCCGTCAGGAATa > 1:123611/1‑81 (MQ=255) aaTGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATacac > 1:123622/1‑80 (MQ=255) aTGAAAAGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATacac > 2:123620/1‑79 (MQ=255) aaaaGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGc < 1:123592/81‑1 (MQ=255) aaaGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGCg > 1:123618/1‑81 (MQ=255) aaGGGAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGCg > 1:123635/1‑80 (MQ=255) ggAATGATATGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGCGTAt > 2:123615/1‑80 (MQ=255) | AGCGGTATGGTGGCAATGTAAATCGAAATCATGTTCACTTTGTATCATGCCGCTTTATTAAATGAAAAGGGAATGATGTGTTGTAAGAAACCAAAGCAATCATTTCTTTATATTCCTTATTTTTGCCGTCAGGAATACACAAGGCGTAT > NC_000913/558820‑558968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |