| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 559,088 | G→A | D39N (GAT→AAT) | sfmC → | putative fimbrial chaperone SfmC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 559,088 | 0 | G | A | 100.0% | 52.5 / NA | 16 | D39N (GAT→AAT) | sfmC | putative fimbrial chaperone SfmC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (8/8); total (8/8) | |||||||||||
ATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAAC > NC_000913/559019‑559165 | aTCATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTaaa > 2:123629/1‑78 (MQ=255) ttCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGc > 1:123630/1‑81 (MQ=255) aGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATg > 2:123633/1‑80 (MQ=255) cgcCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGAt < 1:123608/81‑1 (MQ=255) gcCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGAtt < 1:123609/81‑1 (MQ=255) cccATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGATTa < 2:123610/81‑1 (MQ=255) ggAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCa > 2:123632/1‑80 (MQ=255) cATTAGGTGCCACGCATATTATTTATCCCGCTAGTGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAgc < 2:123611/81‑1 (MQ=255) aGGTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCtt > 2:123640/1‑81 (MQ=255) gTGCCACGCGTATTATTTATCCCGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTc > 1:123639/1‑81 (MQ=255) tattatTTATCCCGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTc < 1:123612/81‑1 (MQ=255) ttatCCCGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGAt > 2:123644/1‑81 (MQ=255) ccGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGaa < 1:123614/80‑1 (MQ=255) ccGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGaa > 1:123641/1‑80 (MQ=255) ccGCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGaa < 2:123613/80‑1 (MQ=255) gCTAATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAAc < 1:123615/81‑1 (MQ=255) | ATCATTTCGGCCAGCGCCCATGCTGCCGGAGGGATCGCATTAGGTGCCACGCGTATTATTTATCCCGCTGATGCTAAACAGACTGCGGTATGGATTAGAAATAGCCATACCAATGAGCGCTTTCTGGTCAATTCGTGGATTGAAAAC > NC_000913/559019‑559165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |