| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 563,890 | A→G | I197I (ATT→ATC) | fimZ ← | putative LuxR family transcriptional regulator FimZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 563,890 | 0 | A | G | 100.0% | 33.3 / NA | 11 | I197I (ATT→ATC) | fimZ | putative LuxR family transcriptional regulator FimZ |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/5); total (6/5) | |||||||||||
GCGGATGCGATATTTATGATCAATTATAATTAATATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACAATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTATTGCTAAGTAATAACTTAT > NC_000913/563813‑563966 | gCGGATGCGATATTTATGATCAATTATAATTAATATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACGAtt > 1:124441/1‑81 (MQ=255) tATGATCAATTATAATTAATATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTa < 1:124430/80‑1 (MQ=255) aTTATAATTAATATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCAt < 2:124431/81‑1 (MQ=255) aTTCGTATAATTTGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCAc > 1:124444/1‑81 (MQ=255) aTTCGTATAATTTGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCAc < 2:124432/81‑1 (MQ=255) taATTTGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTg < 2:124433/80‑1 (MQ=255) tGGCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTAt > 1:124453/1‑81 (MQ=255) ggCGTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTAtt > 1:124464/1‑81 (MQ=255) gTAGTCGATAAGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTATTGc > 2:124450/1‑80 (MQ=255) aGCTCTACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTATTGCTAAGTAATAAc < 1:124434/81‑1 (MQ=255) ctACGATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTATTGCTAAGTAATAACTTAt > 2:124445/1‑81 (MQ=255) | GCGGATGCGATATTTATGATCAATTATAATTAATATTATATTAATTCGTATAATTTGGCGTAGTCGATAAGCTCTACAATTGAATGCAAACCTAGCTTGCCATAAATATTAGATTTATGCGCACTAACTGTTTTATTGCTAAGTAATAACTTAT > NC_000913/563813‑563966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |