| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 582,267 | G→A | pseudogene (540/655 nt) | ybcY ← | DLP12 prophage; putative SAM‑dependent methyltransferase YbcY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 582,267 | 0 | G | A | 100.0% | 37.6 / NA | 12 | pseudogene (540/655 nt) | ybcY | DLP12 prophage; putative SAM‑dependent methyltransferase YbcY |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (4/8); total (4/8) | |||||||||||
TTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCATCGCCAAG > NC_000913/582191‑582340 | ttGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTaaa > 1:127444/1‑79 (MQ=255) actttGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATg < 2:127423/78‑1 (MQ=255) ttttAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCt < 2:127424/81‑1 (MQ=255) gAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATgcg > 1:127442/1‑81 (MQ=255) gAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATgcg > 2:127445/1‑81 (MQ=255) tGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATc < 1:127425/81‑1 (MQ=255) agagTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGtttt < 2:127426/80‑1 (MQ=255) agagTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGttt < 2:127427/79‑1 (MQ=255) tcttcGGAATCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGcac > 1:127448/1‑80 (MQ=255) aaTCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCAt < 1:127428/81‑1 (MQ=255) aTCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCATc > 1:127447/1‑81 (MQ=255) aTCTTTTGTGTTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCATc < 2:127429/81‑1 (MQ=255) gtgtTTAAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCATCGCCAAg < 2:127430/80‑1 (MQ=255) | TTGAACCTTGGTTTTAACATTCTCGAAATGCTCTGAGAGTATATGTGTTAAGCCTTCTTCGGAATCTTTTGTGTTTGAAAAGATGCCTTTCTGATTGTAAATGCGCATCAGTTTTTGACCGAAGCTATTGTGCACAACTCCATCGCCAAG > NC_000913/582191‑582340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |