| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 314,734 | Δ1 bp | pseudogene (378/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 314,732 | 0 | A | . | 96.2% | 105.0 / ‑1.2 | 26 | pseudogene (376/888 nt) | eaeH | putative porin domain‑containing protein EaeH |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (9/16); minor base T (1/0); total (10/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
TGGCCACAGCTAAAGCTAACCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGATAAAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGCCGACAAATATGTTGTTC > NC_000913/314652‑314806 | tGGCCACAGCTAAAGCTAACCAGGAAATACAGGAGTGGCTCGGGAAATATGATACTGCGCGCGTCAAACTGAATGTCGATa < 2:65752/81‑1 (MQ=255) acaGCTAAAGCTAACCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGATaagatt > 2:65780/1‑77 (MQ=255) agctaaagctaaCCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTtc < 1:65753/81‑1 (MQ=255) ctaaagctaaCCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCG‑TTAAGATTtctc > 2:65790/1‑81 (MQ=255) gctaaCCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGa < 2:65754/81‑1 (MQ=255) ctaaCCAGGAAATACAGGAGTGGCTCGGGAAGTATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AGGATTTCTCACTGaa < 2:65755/81‑1 (MQ=255) ccAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGAt < 2:65756/81‑1 (MQ=255) cAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGAtt > 1:65783/1‑81 (MQ=255) ggAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGAttct < 2:65757/81‑1 (MQ=255) aaaTACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGAttcttc < 1:65758/81‑1 (MQ=255) cAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTgg < 2:65759/81‑1 (MQ=255) aGGTGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTgg > 2:65791/1‑80 (MQ=255) aGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTgg > 1:65787/1‑80 (MQ=255) aGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTgg > 1:65808/1‑80 (MQ=255) ggAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGaa < 2:65760/81‑1 (MQ=255) aGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAAt < 2:65761/81‑1 (MQ=255) ggCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCt > 2:65796/1‑81 (MQ=255) gggAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATc > 1:65782/1‑81 (MQ=255) gggAAATATGGTACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATc < 2:65762/81‑1 (MQ=255) tACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGAt < 2:65763/81‑1 (MQ=255) tACTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGAt < 1:65764/81‑1 (MQ=255) cTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATAc < 2:65765/81‑1 (MQ=255) cTGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATAc < 2:65766/81‑1 (MQ=255) tGCGCGCGTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACg > 2:65788/1‑81 (MQ=255) cgcgcgTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGcc < 1:65767/81‑1 (MQ=255) cgcgcgTCAAACTGAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGcc > 2:65797/1‑81 (MQ=255) gAATGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGCCGACAAATAtgttg > 2:65792/1‑81 (MQ=255) tGTCGAT‑AAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGCCGACAAATATGTTGTTc < 1:65768/81‑1 (MQ=255) | TGGCCACAGCTAAAGCTAACCAGGAAATACAGGAGTGGCTCGGGAAATATGGTACTGCGCGCGTCAAACTGAATGTCGATAAAGATTTCTCGCTGAAGGATTCTTCGCTGGAAATGCTTTATCCGATTTATGATACGCCGACAAATATGTTGTTC > NC_000913/314652‑314806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |