| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,244,695 | Δ1 bp | coding (381/1545 nt) | malF ← | maltose ABC transporter membrane subunit MalF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,244,693 | 0 | C | . | 96.9% | 135.4 / ‑0.5 | 32 | coding (383/1545 nt) | malF | maltose ABC transporter membrane subunit MalF |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base . (18/13); total (19/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
GCTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCGCCCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACTTCCTGCGCACGTT > NC_000913/4244613‑4244768 | gCTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATcgc > 1:795952/1‑81 (MQ=255) cTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATcgcc < 2:795912/81‑1 (MQ=255) cTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATcgcc > 1:795966/1‑81 (MQ=255) cTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATcgca < 1:795913/81‑2 (MQ=255) tttAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGa > 1:795967/1‑81 (MQ=255) ttAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGAc > 2:795959/1‑81 (MQ=255) aaaaGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGAcc > 2:795975/1‑80 (MQ=255) aaaaGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGAcc < 1:795914/80‑1 (MQ=255) aaaaGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGAcc > 1:795974/1‑80 (MQ=255) aaaGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCa < 1:795915/80‑1 (MQ=255) aaaGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCa < 2:795916/80‑1 (MQ=255) gCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGt > 2:795965/1‑81 (MQ=255) tCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTtat < 2:795917/81‑1 (MQ=255) ggAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAg > 1:795981/1‑81 (MQ=255) agagGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGt > 1:795980/1‑81 (MQ=255) agGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGttt < 1:795918/81‑1 (MQ=255) agGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGttt > 1:795970/1‑81 (MQ=255) tAATGTTTGCCCGTTTCTCCGTCGGTGAGGGCCAGTTGCCACTCGTCGCCGGCCGGGTAAAGACCGAAGTTATAGGttttt > 2:888407/1‑80 (MQ=255) tGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCtt < 1:795919/80‑1 (MQ=255) tGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTg > 1:795978/1‑81 (MQ=255) ccGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGcc < 1:795920/81‑1 (MQ=255) cGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCa < 2:795921/81‑1 (MQ=255) tCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGc > 2:795987/1‑81 (MQ=255) tCGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGc > 2:795983/1‑81 (MQ=255) cGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGc < 1:795922/80‑1 (MQ=255) cGCCGTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGc < 2:795923/80‑1 (MQ=255) gTCGCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATc > 1:795993/1‑80 (MQ=255) gCTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTaa > 2:795977/1‑80 (MQ=255) cTGAGCGCCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTaaca < 1:795924/81‑1 (MQ=255) gcgcCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAacac < 2:795925/81‑1 (MQ=255) cgcCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACt < 1:795926/81‑1 (MQ=255) gcCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACtt > 1:795995/1‑81 (MQ=255) gcCAGTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACtt > 2:795984/1‑81 (MQ=255) gTTGCCACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACTTCCTg > 2:795973/1‑81 (MQ=255) ccACTCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACTTCCTGCGCa > 2:795999/1‑81 (MQ=255) tCATCG‑CCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACTTCCTGCGCACGtt > 1:795996/1‑81 (MQ=255) | GCTCGCCGCCAAATTTAAAAGCGTCGGAGAGGTAATTTTTGCCGGTTTCGCCGTCGCTGAGCGCCAGTTGCCACTCATCGCCCGCCGGGTAAAGACCAAAGTTATAGGTTTTGCCTGCTTGCCAGGAGCGATCTAACAACACTTCCTGCGCACGTT > NC_000913/4244613‑4244768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |