| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,693,155 | Δ1 bp | coding (1109/1374 nt) | uidB ← | glucuronide:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,693,153 | 0 | G | . | 76.2% | 37.4 / 23.5 | 21 | coding (1111/1374 nt) | uidB | glucuronide:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base G (2/3); new base . (11/5); total (13/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTGCACCTGATTGGCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACGGGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTATCAGCTT > NC_000913/1693073‑1693233 | ttGCACCTGATTGGCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACg > 2:286272/1‑81 (MQ=255) aCCTGATTGGCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACggta > 1:286264/1‑78 (MQ=255) ggCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGTCCGCATTTACGGGTAAATgaga < 2:286234/80‑1 (MQ=255) ggCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACGGGTAAATGAGaa > 2:286256/1‑81 (MQ=255) atatatCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGt > 1:286261/1‑80 (MQ=255) atatCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGaa > 2:286262/1‑81 (MQ=255) tatCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGaa > 1:286275/1‑80 (MQ=255) atCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGaa > 1:286263/1‑79 (MQ=255) gCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGt > 2:286259/1‑80 (MQ=255) gCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTg < 1:286235/81‑1 (MQ=255) cTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACGGGTAAATGAGAATAGTGAATAGGTg < 2:286236/81‑1 (MQ=255) cccAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCtt > 2:286268/1‑81 (MQ=255) aaTAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACGGGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAAt < 2:286237/81‑1 (MQ=255) aTAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTc < 1:286238/81‑1 (MQ=255) aaGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCa > 2:286274/1‑81 (MQ=255) aGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCAc < 1:286239/81‑1 (MQ=255) aTTGAACCTCCGATTGCCTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCa < 2:286240/81‑1 (MQ=255) cTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTc > 2:286271/1‑80 (MQ=255) cTGACCGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCt < 2:866623/81‑1 (MQ=255) cGCATTTAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACgg > 1:286277/1‑80 (MQ=255) tttAC‑GGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTAt > 2:286265/1‑79 (MQ=255) tttAC‑GGTAAATGAGAACAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTAt > 1:286278/1‑79 (MQ=255) aCGGGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTATCAGc > 1:286273/1‑81 (MQ=255) gggTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTATCAGCtt < 1:286242/81‑1 (MQ=255) | TTGCACCTGATTGGCGATATATCCGCTTAACCCCAAAATAAAGGCAGGAATTGAACCTCCGATTGCCTGACCGCATTTACGGGTAAATGAGAATAGTGAATAGGTGAGCCCTTCAATTCGCACGCCGGTCAGGTATTCACCGTATTCTACGGTATCAGCTT > NC_000913/1693073‑1693233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |