| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 22 (0.730) | 20/160 | 0.5 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 32 (1.060) | 27/160 | 0.2 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGC > NC_000913/2737039‑2737197 | aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGa < 1:635914‑M2/2‑1 (MQ=255) tcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTc < 2:635916‑M2/6‑1 (MQ=255) gATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggt < 2:456493‑M2/81‑4 (MQ=255) gATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggt > 1:456492‑M2/1‑78 (MQ=255) aTTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtg > 1:456494‑M2/1‑77 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGAc < 2:58520‑M2/14‑1 (MQ=255) cGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgat > 1:456495‑M2/1‑74 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACggg < 1:197274‑M2/17‑1 (MQ=255) acaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGAc < 2:635877‑M2/22‑1 (MQ=255) aaaaaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaa < 1:635778‑M2/81‑15 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGAc > 2:456521‑M2/58‑79 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGAc > 2:456519‑M2/58‑79 (MQ=255) aaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACaa < 1:635863‑M2/24‑1 (MQ=255) aagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAag < 1:326753‑M2/25‑1 (MQ=255) aaGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaact < 1:883874‑M2/80‑17 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAaga < 1:197270‑M2/26‑1 (MQ=255) aGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaactta < 2:635773‑M2/81‑19 (MQ=255) gACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttact < 2:326844‑M2/80‑21 (MQ=255) cgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTaa > 1:456515‑M2/50‑80 (MQ=255) gggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTaaaa < 2:635875‑M2/33‑1 (MQ=255) aaaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgattt > 1:456496‑M2/1‑56 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAttt < 2:4028‑M2/36‑1 (MQ=255) aTGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtg < 1:326835‑M2/80‑30 (MQ=255) tatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTAt > 2:456524‑M2/43‑80 (MQ=255) agaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatg > 1:456497‑M2/1‑48 (MQ=255) gaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatga < 1:326842‑M2/81‑35 (MQ=255) tgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACaa > 2:456522‑M2/39‑81 (MQ=255) aTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgat < 1:54295‑M2/81‑36 (MQ=255) tcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttt < 1:635774‑M2/81‑43 (MQ=255) tcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttt < 2:197228‑M2/81‑43 (MQ=255) acacaTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttttt > 1:456498‑M2/1‑37 (MQ=255) caTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag < 2:54283‑M2/81‑48 (MQ=255) actatcaataagttggagtcattaccGAATTCACCAAGACGAGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCa < 2:61460‑M2/55‑1 (MQ=255) aTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg > 2:456499‑M2/1‑33 (MQ=255) aTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 1:61544‑M2/81‑49 (MQ=255) aTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg < 2:326867‑M2/81‑49 (MQ=255) atcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGc > 1:456538‑M2/24‑80 (MQ=255) ttGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg > 2:456500‑M2/1‑30 (MQ=255) tcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaa < 2:326773‑M2/59‑1 (MQ=255) cAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg < 2:197224‑M2/81‑59 (MQ=255) cAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg < 2:61546‑M2/81‑59 (MQ=255) ggAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 1:54282‑M2/81‑61 (MQ=255) gagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGaa < 1:58491‑M2/69‑1 (MQ=255) aCGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 2:635772‑M2/81‑64 (MQ=255) aCGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttc < 1:635786‑M2/81‑64 (MQ=255) ggTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg < 1:635779‑M2/81‑66 (MQ=255) cattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTAc > 2:456520‑M2/8‑81 (MQ=255) aTGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt < 2:58600‑M2/81‑69 (MQ=255) gCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 2:4068‑M2/80‑70 (MQ=255) accGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTcc < 1:456501‑M2/77‑1 (MQ=255) accGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCg > 2:456523‑M2/4‑81 (MQ=255) cTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttcta < 1:54279‑M2/81‑72 (MQ=255) gAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGc > 1:456531/1‑80 (MQ=255) | CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGC > NC_000913/2737039‑2737197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |