| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,743,700 | 0 | T | . | 74.3% | 58.4 / 43.6 | 35 | coding (76/483 nt) | yfiB | lipoprotein YfiB |
| Reads supporting (aligned to +/- strand): ref base T (6/3); new base . (14/12); total (20/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATC > NC_000913/2743622‑2743776 | gATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGtt < 2:457621/80‑1 (MQ=255) atatGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGttac > 1:457669/1‑79 (MQ=255) tGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACt < 2:457622/80‑1 (MQ=255) gATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCt > 2:457666/1‑81 (MQ=255) gATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCt > 1:457657/1‑81 (MQ=255) aTAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTg < 1:457623/81‑1 (MQ=255) aaGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGc < 2:457624/81‑1 (MQ=255) aGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGc > 1:457665/1‑80 (MQ=255) aGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCa < 2:457625/81‑1 (MQ=255) gCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGc > 2:457659/1‑79 (MQ=255) gCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGc > 1:457660/1‑79 (MQ=255) aCCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAg > 2:457671/1‑81 (MQ=255) ccTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTc < 1:457626/81‑1 (MQ=255) tAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTcgccgc > 1:457658/1‑81 (MQ=255) gCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTa > 1:457667/1‑81 (MQ=255) cACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTAt < 1:457627/81‑1 (MQ=255) cACCCCTGGTTTTCACCTCACTAATACTGACTGGCAGCCAGTCCCAACAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTAt < 1:457628/81‑1 (MQ=255) cTGGTTTTCACCTCACTAATACTGTCTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAAt > 1:457664/1‑81 (MQ=255) tGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAAt > 1:457668/1‑81 (MQ=255) tGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAAt > 1:457662/1‑81 (MQ=255) ccTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGAtt < 2:457629/81‑1 (MQ=255) cTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGAttt < 1:457630/81‑1 (MQ=255) ctgactgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATcc < 2:457631/81‑1 (MQ=255) ctgactgGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATccg < 1:457632/81‑1 (MQ=255) ctgactgGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATccg < 2:457633/81‑1 (MQ=255) tgactgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATccg > 1:457677/1‑81 (MQ=255) tgactgGCTGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATccgc > 2:457672/1‑81 (MQ=255) tgGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCgg > 2:457679/1‑81 (MQ=255) tGCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACt > 1:457676/1‑81 (MQ=255) gCCAGTCCCCTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTg > 2:457663/1‑81 (MQ=255) cccTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCt < 2:457634/80‑1 (MQ=255) cccTCAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCt < 1:457635/80‑1 (MQ=255) cAGGGAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCt > 2:457675/1‑81 (MQ=255) gAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTAt > 1:457681/1‑80 (MQ=255) gAAAG‑TTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTAt > 2:457730/1‑80 (MQ=255) aaaGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATc < 1:457637/81‑1 (MQ=255) aGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTAt > 1:457670/1‑78 (MQ=255) | GATATGATAAAGCACCTGGTAGCACCCCTGGTTTTCACCTCACTAATACTGACTGGCTGCCAGTCCCCTCAGGGAAAGTTTACTCCTGAGCAAGTCGCCGCTATGCAATCTTATGGATTTACTGAATCCGCCGGCGACTGGTCGCTGGGCTTATC > NC_000913/2743622‑2743776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |