| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,281,720 | 0 | T | C | 66.7% | 24.1 / 19.0 | 24 | intergenic (+91/+63) | yjcE/yjcF | putative transporter YjcE/pentapeptide repeat‑containing protein YjcF |
| Reads supporting (aligned to +/- strand): ref base T (6/2); new base C (8/8); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TAACCAGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCA > NC_000913/4281643‑4281799 | tAACCAGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGActct < 1:804374/81‑1 (MQ=255) ccAGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTaa > 1:804403/1‑80 (MQ=255) aGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAAc < 2:804376/81‑1 (MQ=255) aGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAAc < 2:804375/81‑1 (MQ=255) ggCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACa < 2:804377/81‑1 (MQ=255) ccGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACaaat < 1:804378/81‑1 (MQ=255) aTCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTAt < 1:804379/80‑1 (MQ=255) aTCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTAt < 2:804380/80‑1 (MQ=255) tGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTAtctct > 2:804421/1‑81 (MQ=255) aaGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCttt > 2:804414/1‑80 (MQ=255) cAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTc < 2:804381/81‑1 (MQ=255) aaTCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCCCTCTTTTAAAGTc > 1:804418/1‑80 (MQ=255) aTCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCaa > 1:804404/1‑81 (MQ=255) tGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCAtt > 1:804413/1‑81 (MQ=255) tGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCAtt > 1:804400/1‑81 (MQ=255) gCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTg > 2:804411/1‑81 (MQ=255) aCAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGttctt > 1:804412/1‑81 (MQ=255) aCAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGttctt > 2:804415/1‑81 (MQ=255) aCAGGTTAGCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGttctt > 1:804410/1‑81 (MQ=255) gCTCGGGCTAACATTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTaa < 2:804382/81‑1 (MQ=255) aTTCATGACTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCa > 1:804420/1‑81 (MQ=255) ttCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCAt < 2:804383/81‑1 (MQ=255) cATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCt > 2:804384/1‑81 (MQ=255) gATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTg > 2:804424/1‑80 (MQ=255) aTTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCa < 2:804385/81‑1 (MQ=255) | TAACCAGGCCCGAGGTAATCTGAAAAAGGTGCAATCTTTTGCACCTTTAACAGGTTAGCTCGGGCTAACATTCATGATTCTAAAACAAATAAATTATCTCTCTTTTAAAGTCAATTCATTGGCTGTTCTTCGACTTAACCTCAATCTGCATCTTGCA > NC_000913/4281643‑4281799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |