| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,783,901 | C→T | V177I (GTT→ATT) | ypjB ← | DUF5508 domain‑containing protein YpjB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,783,901 | 0 | C | T | 75.0% | 26.3 / 6.0 | 16 | V177I (GTT→ATT) | ypjB | DUF5508 domain‑containing protein YpjB |
| Reads supporting (aligned to +/- strand): ref base C (1/3); new base T (5/7); total (6/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCTGTCCAGAAAAGAAGCACCCCTTAA > NC_000913/2783827‑2783981 | ttCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCaa < 2:464588/80‑1 (MQ=255) cGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAAc < 2:464589/80‑1 (MQ=255) cTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAAt < 2:464590/81‑1 (MQ=255) cTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAAt < 1:464592/81‑1 (MQ=255) cTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAAt > 2:464618/1‑81 (MQ=255) cTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAAt < 1:464591/81‑1 (MQ=255) tCACAGGTTTTAATGATTTTTCATTACTCCTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAAt > 1:464602/1‑80 (MQ=255) acaGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGAc < 2:464593/81‑1 (MQ=255) ggTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGtt < 1:464594/81‑1 (MQ=255) ttAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGTTccc > 1:464605/1‑80 (MQ=255) ttAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGTTccc > 1:464610/1‑80 (MQ=255) tttttCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGTTCCCCAGTTca > 2:464612/1‑80 (MQ=255) ttgtAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAg < 1:464596/81‑1 (MQ=255) ttgtAAGCAGGCGCATTAAAAATACACGGAGTATCAATATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAg < 1:464595/81‑1 (MQ=255) aTACACGGAGTATCAATATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCTGTCCAGaa < 2:464597/81‑1 (MQ=255) acGGAGTATCAATATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCTGTCCAGAAaag > 1:464619/1‑80 (MQ=255) cATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCTGTCCAGAAAAGAAGCACCCCTTaa < 2:464598/81‑1 (MQ=255) | TTCGCTCACAGGTTTTAATGATTTTTCATTACTCTTGTTGTAAGCAGGCGCATTAAAAATACACGGAGTATCAACATCAAACAATGACGTTCCCCAGTTCACATATTGAATATCATAGTTACTGAAGTTCTGTCCAGAAAAGAAGCACCCCTTAA > NC_000913/2783827‑2783981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |