| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 156,198 | (A)6→5 | coding (4/741 nt) | yadV ← | putative fimbrial chaperone YadV |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 156,193 | 0 | A | . | 100.0% | 51.7 / NA | 13 | coding (9/741 nt) | yadV | putative fimbrial chaperone YadV |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (6/7); total (6/7) | |||||||||||
TGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTA > NC_000913/156117‑156267 | tGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTaaaaa < 2:35957/81‑1 (MQ=255) gCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATc > 2:35973/1‑81 (MQ=255) gACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGa < 1:35958/80‑1 (MQ=255) gACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGa > 2:35981/1‑80 (MQ=255) aCGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATa < 2:35959/81‑1 (MQ=255) aTGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATagag < 2:35960/81‑1 (MQ=255) cTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGttaat > 1:35976/1‑81 (MQ=255) aaaGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGttaattaa < 1:343996/81‑1 (MQ=255) aaGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGTTAATTaaa < 1:35961/81‑1 (MQ=255) gCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGTTAGAGTTAATTAAAAc < 2:35962/81‑1 (MQ=255) gCATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATaaaa > 1:35975/1‑80 (MQ=255) cATAAAGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATaaaa > 1:35982/1‑79 (MQ=255) aaGCTGTTGTATGTTTGGTGTT‑AAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGaa < 1:35963/80‑1 (MQ=255) tGGTGTT‑AAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGta > 1:35980/1‑81 (MQ=255) | TGACAATGTCCGCAATAGACGATGAACTAAAAGCCATACAGGTTACGAAGCATAAAGCTGTTGTATGTTTGGTGTTAAAAAACATAAACCATCCCTGATAGAGTTAATTAAAACAGGGAATAATATAAAATAGAAATTATTATTCCCTGTA > NC_000913/156117‑156267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |