| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,203,694 | Δ1 bp | coding (427/558 nt) | ymfL → | e14 prophage; uncharacterized protein YmfL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,203,692 | 0 | T | . | 100.0% | 56.9 / NA | 14 | coding (425/558 nt) | ymfL | e14 prophage; uncharacterized protein YmfL |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/5); total (9/5) | |||||||||||
GTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGT > NC_000913/1203620‑1203768 | gTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCt > 2:238146/1‑81 (MQ=255) gCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAg > 1:238149/1‑80 (MQ=255) gAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATg < 1:238118/81‑1 (MQ=255) gAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATg > 1:238156/1‑81 (MQ=255) gAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATg > 2:238151/1‑81 (MQ=255) gACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATgcag > 1:238142/1‑81 (MQ=255) gACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATgcag > 1:238153/1‑81 (MQ=255) tAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTg < 1:238119/80‑1 (MQ=255) gagccGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACa < 2:238120/78‑1 (MQ=255) aCAGCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCAttt < 2:238121/81‑1 (MQ=255) gCAATTAACGACGAGCTGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAg < 2:238122/81‑1 (MQ=255) tGTATCTCTCAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCcg > 2:238155/1‑81 (MQ=255) ctcAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAgtgt > 2:238154/1‑81 (MQ=255) ctcAA‑TTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAgtgt > 2:238161/1‑81 (MQ=255) | GTTCAGCAATCGAAGACGGTGTAGTGGAACCGCATGAGAAGACAGCAATTAACGACGAGCTGTATCTCTCAATTTCGAAGCTGCAGGAGCATGCAGCACTTGTCTACAAAATTTTTTGCATTTCAGAAAGTAATGACGCCCGCGAGTGT > NC_000913/1203620‑1203768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |