| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,728 | 0 | A | . | 100.0% | 46.6 / NA | 12 | intergenic (‑109/+32) | uspF/ompN | nucleotide binding filament protein/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/5); total (7/5) | |||||||||||
GTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATA > NC_000913/1435649‑1435793 | gtgtAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGa > 2:271752/1‑80 (MQ=255) tAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaag < 1:271737/81‑2 (MQ=255) tAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaa < 1:271738/80‑1 (MQ=255) tAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaa < 2:271739/80‑1 (MQ=255) aGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCa > 1:271765/1‑81 (MQ=255) aGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCa > 2:271758/1‑81 (MQ=255) aTGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCTCGCCAt > 2:271757/1‑80 (MQ=255) acacTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACa < 2:271740/81‑1 (MQ=255) tgtAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCagga < 1:271743/81‑1 (MQ=255) tgtAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCagga < 2:271741/81‑1 (MQ=255) tgtAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCagg < 1:271742/80‑1 (MQ=255) tCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGa > 2:271759/1‑81 (MQ=255) caTTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATaa < 2:904212/81‑1 (MQ=255) aTCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGc > 2:271769/1‑81 (MQ=255) aaaGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGa > 1:271770/1‑80 (MQ=255) gaggaAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAata > 2:271763/1‑81 (MQ=255) | GTGTAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATA > NC_000913/1435649‑1435793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |