| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,799,177 | 0 | T | . | 100.0% | 51.7 / NA | 13 | intergenic (‑235/+49) | pheS/pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (9/4); total (9/4) | |||||||||||
GGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAA > NC_000913/1799098‑1799244 | ggCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt > 1:320663/1‑81 (MQ=255) gCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCttcagg > 2:320665/1‑77 (MQ=255) tgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTttct > 2:320672/1‑81 (MQ=255) tgaGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTttct > 2:580499/1‑81 (MQ=255) agaCAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTttctct > 2:320667/1‑81 (MQ=255) gaCAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTttctctt < 1:320653/81‑1 (MQ=255) cAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcctcct > 1:320673/1‑81 (MQ=255) cAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcctcct > 2:320671/1‑81 (MQ=255) cgcgCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGAtt < 1:320654/81‑1 (MQ=255) cgcATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGAtt > 2:320678/1‑79 (MQ=255) aaaaaaaGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTa < 1:320655/81‑1 (MQ=255) aGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTa > 1:320668/1‑80 (MQ=255) gCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaa < 2:320656/81‑1 (MQ=255) cTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaa > 2:320670/1‑80 (MQ=255) ccACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTaaaaa > 2:320677/1‑79 (MQ=255) | GGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAGTAAAAA > NC_000913/1799098‑1799244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |