| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,974,201 | Δ1 bp | coding (1124/1965 nt) | cheA ← | chemotaxis protein CheA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,974,199 | 0 | G | . | 100.0% | 60.5 / NA | 15 | coding (1126/1965 nt) | cheA | chemotaxis protein CheA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (11/4); total (11/4) | |||||||||||
CGACGCTGTTTTTACCTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTA > NC_000913/1974124‑1974273 | cGACGCTGTTTTTACCTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGTggtca < 2:347088/80‑4 (MQ=255) gACGCTGTTTTTACCTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGc > 2:347113/1‑81 (MQ=255) aCGCTGTTTTTACCTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCg < 1:347089/81‑1 (MQ=255) ccTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATg < 1:347090/80‑1 (MQ=255) tGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGt > 1:347108/1‑81 (MQ=255) ggcgAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTc > 2:347121/1‑80 (MQ=255) gAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTAt > 1:347111/1‑80 (MQ=255) gTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCt > 1:347131/1‑81 (MQ=255) tttCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCttt < 2:347091/80‑1 (MQ=255) tCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGt > 1:347104/1‑81 (MQ=255) ggCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTc > 2:347115/1‑79 (MQ=255) tCAATACCGTGATCGAGGCTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAg > 2:347123/1‑81 (MQ=255) cTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCg > 1:347120/1‑81 (MQ=255) cTATTGCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCg > 1:347126/1‑81 (MQ=255) gCGTACCAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCTCACCAGCGTCAGt > 2:347122/1‑81 (MQ=255) ccAGGT‑GGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTa < 2:347092/80‑1 (MQ=255) | CGACGCTGTTTTTACCTGCGGCGAGCCGTTTTTCTGGCAGTTCAATACCGTGATCGAGGCTATTGCGTACCAGGTGGGTCAGCGGGTCGATAATGCGTTCTATCAGGCTTTTGTCGAGTTCAGTAGAACTGCCCACCAGCGTCAGTTCTA > NC_000913/1974124‑1974273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |