Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,078,118	Δ1 bp	coding (179/195 nt)	yeeW →	CP4‑44 prophage; putative uncharacterized protein YeeW

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,078,116	0	C	.	100.0%	78.0 / NA	19	coding (177/195 nt)	yeeW	CP4‑44 prophage; putative uncharacterized protein YeeW
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (9/10);  total (9/10)

ATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCT  >  NC_000913/2078037‑2078192                                                                                |                                                                             ataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcc                                                                             >  2:363345/1‑81 (MQ=255) ataaGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcc                                                                             <  2:363318/81‑1 (MQ=255)    aGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcctca                                                                          <  1:363320/81‑4 (MQ=255)    aGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcctca                                                                          <  1:363319/81‑4 (MQ=255)     ggCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcctcac                                                                         <  2:363321/81‑5 (MQ=255)      gCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGcctcac                                                                         >  2:363352/1‑76 (MQ=255)              aaaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTg                                                               <  2:363322/81‑1 (MQ=255)               aaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGt                                                              <  1:363323/81‑1 (MQ=255)               aaCGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGt                                                              <  2:363324/81‑1 (MQ=255)                    ttATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGa                                                          >  1:363363/1‑80 (MQ=255)                    ttATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGAc                                                         <  1:363325/81‑1 (MQ=255)                        tCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATg                                                     >  1:363343/1‑81 (MQ=255)                         cACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATg                                                     >  1:363344/1‑80 (MQ=255)                            tCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGt                                                 >  1:363348/1‑81 (MQ=255)                             ccGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGt                                                 >  1:363355/1‑80 (MQ=255)                              cgcgTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTg                                                <  2:363326/80‑1 (MQ=255)                               gcgTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGAt                                              <  2:363327/81‑1 (MQ=255)                                         tGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGtata                                    <  1:363328/81‑1 (MQ=255)                                            ccGTGACTCTACCGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTg                                 <  2:363329/81‑1 (MQ=255)                                                       ccGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACcac                      <  2:363330/81‑1 (MQ=255)                                                        cGAAACACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACca                       >  1:363349/1‑79 (MQ=255)                                                          aaaCACCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGa                   <  1:363331/81‑1 (MQ=255)                                                            acacCGGCAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGaaa                 >  2:363351/1‑81 (MQ=255)                                                                   cAACTTATGCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACt          >  2:363361/1‑81 (MQ=255)                                                                           gCCAG‑CCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCt  >  1:363356/1‑81 (MQ=255)                                                                                |                                                                             ATAAGGCCGCTGAAAACGGTTATTCACTCCGCGTGGTGGATGACCGTGACTCTACCGAAACACCGGCAACTTATGCCAGCCCTCACCAGTTGCTGTAAGACAATGCAGTGATACAGGGTATAGTGCCATTAACCACAGAAACAGCACTGTTGTCCT  >  NC_000913/2078037‑2078192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑