| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,788,669 | Δ1 bp | intergenic (+20/‑316) | ygaQ → / → csiD | putative uncharacterized protein YgaQ/PF08943 family protein CsiD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,788,666 | 0 | C | . | 100.0% | 55.7 / NA | 14 | intergenic (+17/‑319) | ygaQ/csiD | putative uncharacterized protein YgaQ/PF08943 family protein CsiD |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (5/9); total (5/9) | |||||||||||
CCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTGCCCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCAT > NC_000913/2788587‑2788728 | ccTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTGc < 2:499153/80‑1 (MQ=255) gggCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTGcccga > 2:499178/1‑79 (MQ=255) gcTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACggg < 1:499154/81‑1 (MQ=255) ttttAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGat > 2:499173/1‑80 (MQ=255) aGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGataata < 1:499155/80‑1 (MQ=255) aaaCAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATgttta < 1:499156/81‑1 (MQ=255) aCAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATgtttagt < 1:499157/81‑1 (MQ=255) aCAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATgtttagt < 2:499158/81‑1 (MQ=255) cAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATgtttagtt > 1:499179/1‑81 (MQ=255) ccgccgAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACg > 2:499175/1‑81 (MQ=255) gAACTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCAt > 1:499180/1‑81 (MQ=255) cTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCAtttt < 1:499159/81‑1 (MQ=255) cTATCTCTATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCAtttt < 2:499160/81‑1 (MQ=255) tATTTATAATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAg < 1:499161/78‑1 (MQ=255) taATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCAt < 1:499162/81‑1 (MQ=255) taATTTAATGTTATATCTG‑CCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCAt > 2:499176/1‑81 (MQ=255) | CCTGGGCGTAGCGCTCTTCTTTTAGGGAAAACAGGAGAACCGCCGAACTATCTCTATTTATAATTTAATGTTATATCTGCCCCGATAAAACGGGGCAGATAATATGTTTAGTTTACTAACGGTCATTTTGCAGTGAAGCCAT > NC_000913/2788587‑2788728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |