| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,804,744 | Δ1 bp | coding (373/936 nt) | waaS ← | lipopolysaccharide core biosynthesis protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,804,742 | 0 | C | . | 100.0% | 38.1 / NA | 10 | coding (375/936 nt) | waaS | lipopolysaccharide core biosynthesis protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (5/5); total (5/5) | |||||||||||
TTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAA > NC_000913/3804662‑3804815 | tttttGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTc < 2:735508/81‑1 (MQ=255) tGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTccta > 2:735532/1‑78 (MQ=255) atttcATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCatata > 2:735525/1‑81 (MQ=255) atttcATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCatat < 1:735509/80‑1 (MQ=255) ccATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATc > 1:735523/1‑81 (MQ=255) tCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGaaa > 1:735524/1‑81 (MQ=255) cTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCGATAAATCTATGCTCAAAATCATATATAATATCGAaata < 1:735510/81‑1 (MQ=255) ggAAAAAATTGTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTc < 2:735511/80‑1 (MQ=255) gTTCTATTGCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCaa < 2:735512/80‑1 (MQ=255) gCCTTGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAAt > 2:735530/1‑81 (MQ=255) ttGATCTTTTCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCtt > 1:735522/1‑81 (MQ=255) ttCATT‑CCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCaa < 1:735513/79‑1 (MQ=255) | TTTTTGTCAGATAAACTATAATTTCTAATTTCATCCATTCCTATAGGAAAAAATTGTTCTATTGCCTTGATCTTTTCATTCCCTATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAA > NC_000913/3804662‑3804815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |