Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,917,576	Δ1 bp	coding (690/864 nt)	atpG ←	ATP synthase F1 complex subunit gamma

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,917,574	0	C	.	100.0%	124.0 / NA	29	coding (692/864 nt)	atpG	ATP synthase F1 complex subunit gamma
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (11/18);  total (11/18)

AGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGTTCGTACAGGTA  >  NC_000913/3917496‑3917650                                                                               |                                                                             aGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGcct                                                                            >  1:764648/1‑80 (MQ=255)     tGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGcctgat                                                                         >  1:764643/1‑76 (MQ=255)               gtcggtcgCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGAt                                                             >  2:764642/1‑81 (MQ=255)                tcggtcgCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGAtt                                                            <  2:764595/81‑1 (MQ=255)                  ggtcgCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCg                                                          <  2:764596/81‑1 (MQ=255)                    tcgCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGAc                                                        <  1:764598/81‑1 (MQ=255)                    tcgCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGAc                                                        <  1:764597/81‑1 (MQ=255)                      gcgGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACAt                                                      <  1:764599/81‑1 (MQ=255)                             tCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAacgac                                                <  2:764600/80‑1 (MQ=255)                                tCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACgcag                                            <  1:764602/81‑1 (MQ=255)                                tCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACgcag                                            <  1:764601/81‑1 (MQ=255)                                 cGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACgcag                                            >  1:764652/1‑80 (MQ=255)                                   ccaccaTACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGcagcag                                         >  2:764650/1‑81 (MQ=255)                                    caccaTACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAgg                                        >  2:764667/1‑81 (MQ=255)                                         tACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATc                                   <  1:764603/81‑1 (MQ=255)                                           cGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATcc                                  <  2:764604/80‑1 (MQ=255)                                             ggcggcCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAg                                >  2:764655/1‑80 (MQ=255)                                             ggcggcCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGc                               <  1:764605/81‑1 (MQ=255)                                               cggcCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCaa                             <  2:764606/81‑1 (MQ=255)                                                ggcCTGCTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAAc                            >  2:764663/1‑81 (MQ=255)                                                      cTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCtt                       <  2:764607/80‑1 (MQ=255)                                                      cTCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCt                        <  1:764608/79‑1 (MQ=255)                                                       tCGCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCg                     >  1:764664/1‑81 (MQ=255)                                                         gCTGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCgg                    <  1:764609/80‑1 (MQ=255)                                                           tGGCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATc                 >  2:764647/1‑81 (MQ=255)                                                             gCCAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATc                 <  1:764610/79‑1 (MQ=255)                                                               cAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGt             <  2:764611/81‑1 (MQ=255)                                                               cAGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGt             >  1:764661/1‑81 (MQ=255)                                                                aGGTTTTCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGtt            >  2:764674/1‑81 (MQ=255)                                                                     ttCAACCACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGTTCGTa        >  2:764657/1‑80 (MQ=255)                                                                          ccACG‑CCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGTTCGTACAGGTa  <  2:764612/81‑1 (MQ=255)                                                                               |                                                                             AGGCTGCCGCCATTGTCGGTCGCGGCTTTCATCGCCACCATACGGGCGGCCTGCTCGCTGGCCAGGTTTTCAACCACGCCCTGATAAACCTGAGATTCGACATAACGACGCAGCAGGGTATCCAGCAACGCCTTCGGATCGGGTTCGTACAGGTA  >  NC_000913/3917496‑3917650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑