Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	652,357	Δ1 bp	coding (123/1659 nt)	dpiB →	sensory histidine kinase DpiB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	652,354	0	T	.	100.0%	78.4 / NA	19	coding (120/1659 nt)	dpiB	sensory histidine kinase DpiB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (14/5);  total (14/5)

AAAGACTGGCATTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATATTTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGAAAATTATTGCC  >  NC_000913/652275‑652429                                                                                |                                                                            aaaGACTGGCATTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATAtt                                                                            >  1:139516/1‑81 (MQ=255)  aaGACTGGCATTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATAtt                                                                            >  1:139508/1‑80 (MQ=255)   aGACTGGCATTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATAttta                                                                          >  2:139518/1‑80 (MQ=255)           aTTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCTTTGCAGCCCTGGCGCAATA‑TTTACGGCCAGt                                                                 >  2:139527/1‑81 (MQ=255)            tttCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGtt                                                                >  2:139507/1‑81 (MQ=255)              tCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGttt                                                               <  2:139484/80‑1 (MQ=255)               ccGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGtttt                                                              <  2:139485/80‑1 (MQ=255)               ccGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGtttt                                                              <  2:139486/80‑1 (MQ=255)                    gCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGAc                                                        >  1:139512/1‑81 (MQ=255)                      gTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTa                                                      >  1:139523/1‑81 (MQ=255)                         tCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTAtt                                                    <  1:139487/80‑1 (MQ=255)                               tGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCt                                             >  1:139513/1‑81 (MQ=255)                                    aTTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCa                                          <  1:139488/79‑1 (MQ=255)                                            gtTCTCAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGa                                 >  2:139511/1‑80 (MQ=255)                                              tctcAATATTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACAt                              >  1:139543/1‑81 (MQ=255)                                                   atatTTGTCATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCaa                         >  2:139528/1‑81 (MQ=255)                                                           cATTGCAGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAg                 >  2:557925/1‑81 (MQ=255)                                                                 aGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGaa            >  2:139517/1‑80 (MQ=255)                                                                 aGCCCTGGCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGaa            >  1:139520/1‑80 (MQ=255)                                                                       ggCGCAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGAAAattatt     >  1:139526/1‑81 (MQ=255)                                                                        gcgcAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGAAAATTATTg    >  2:139521/1‑81 (MQ=255)                                                                          gcAATA‑TTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGAAAATTATTGcc  >  2:139541/1‑81 (MQ=255)                                                                                |                                                                            AAAGACTGGCATTTCCGCTGCGTATCTTTTTGCTGATTCTGGTGTTCTCAATATTTGTCATTGCAGCCCTGGCGCAATATTTTACGGCCAGTTTTGAGGACTATTTAACGCTTCATGTACGCGACATGGCAATGAATCAGGCGAAAATTATTGCC  >  NC_000913/652275‑652429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑