| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,180,739 | (G)6→7 | coding (529/789 nt) | ycfZ ← | putative inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,180,733 | 1 | . | G | 81.8% | 27.7 / 0.4 | 11 | coding (535/789 nt) | ycfZ | putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (3/6); total (4/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGTCGTGTAGTAAAAGATCCTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑GGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGTTTTAATAT > NC_000913/1180656‑1180805 | aGTCGTGTAGTAAAAGATCCTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑ggg < 2:234717/81‑1 (MQ=255) gtgtAGTAAAAGATCCTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑gggg‑gg > 2:234733/1‑80 (MQ=255) taAAAGATCCTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCCGGGGG‑GGAGCAtt < 1:234718/81‑1 (MQ=255) cTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCtg > 2:234734/1‑81 (MQ=255) aaaTAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTc < 1:234719/81‑1 (MQ=255) aaCGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCgg < 2:234720/81‑1 (MQ=255) cGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑GGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGat > 1:234738/1‑80 (MQ=255) cAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑GGGGAGAAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATAc < 2:234721/81‑1 (MQ=255) gCGATAAAACCTAATGTGTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTgg < 1:234722/81‑1 (MQ=255) tgtgTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGtt < 1:234723/81‑1 (MQ=255) tgtgTTGGTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGtt < 1:234724/81‑1 (MQ=255) ggTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGTTTTAata > 1:234740/1‑81 (MQ=255) gTGCTGCCGGGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGTTTTAatat > 1:234726/1‑81 (MQ=255) | AGTCGTGTAGTAAAAGATCCTGGAAAATAAGATAAACGTCGCAGCCCAGGCGATAAAACCTAATGTGTTGGTGCTGCC‑GGGG‑GGAGCATTTTCATGCTGTTGTCCTGGATGCGGATAATACGTTAGTGGCGGCGTCGATTGTTTTAATAT > NC_000913/1180656‑1180805 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |