| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,733,506 | (A)7→8 | coding (4420/4617 nt) | lhr → | putative ATP‑dependent helicase Lhr |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,733,499 | 1 | . | A | 92.9% | 92.7 / ‑0.5 | 28 | coding (4413/4617 nt) | lhr | putative ATP‑dependent helicase Lhr |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base A (10/16); total (10/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.24e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑AAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCTGACTACCGCA > NC_000913/1733420‑1733571 | cGCTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑a < 1:311480/81‑1 (MQ=255) cTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑aaa < 2:311481/81‑1 (MQ=255) cTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑aa > 1:311515/1‑80 (MQ=255) cTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑aa > 2:311529/1‑80 (MQ=255) ggTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTCTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGCGGC‑aaaa > 2:311528/1‑80 (MQ=255) ccAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑aaaaaaaat > 2:311513/1‑79 (MQ=255) cgcgTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTg < 2:311482/81‑1 (MQ=255) gcgTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTgg > 1:311522/1‑81 (MQ=255) ggcgggTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTgg > 2:311520/1‑80 (MQ=255) ggTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑AAAAAAATGCTGGTCTGGCAGGaa < 2:311483/81‑1 (MQ=255) gtggtCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAgg < 2:311484/80‑1 (MQ=255) cGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTAc > 2:311521/1‑81 (MQ=255) tttCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTc < 1:311485/81‑1 (MQ=255) tttCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTc < 1:311486/81‑1 (MQ=255) tCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCg < 1:311487/80‑1 (MQ=255) ggcggcAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGccc > 1:311519/1‑80 (MQ=255) ggcAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCaga < 1:311488/81‑1 (MQ=255) gcAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAATGAGGAATTACTCGCCCCagag > 1:311523/1‑81 (MQ=255) cAAATTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAgg < 1:311489/81‑1 (MQ=255) aaaTTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGt < 2:311490/81‑1 (MQ=255) aaTTGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGtt < 2:311491/81‑1 (MQ=255) ttGTTACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGtttt < 1:311492/81‑1 (MQ=255) ttACTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCa < 1:311493/81‑1 (MQ=255) aCTCTATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCAc < 2:311494/80‑1 (MQ=255) ctATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACgcgc > 1:311539/1‑81 (MQ=255) ctATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACgcgc > 1:311527/1‑81 (MQ=255) tATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCAcgcg < 1:311495/79‑1 (MQ=255) tATCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCt > 2:311534/1‑81 (MQ=255) tCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCt < 1:311497/79‑1 (MQ=255) tCTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCt < 1:311496/79‑1 (MQ=255) cTGGCGCAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCTGAc > 2:311526/1‑81 (MQ=255) gcgtAAGGTGGC‑AAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAGTTACTCGCCCCAGAGGTTTTCCACGCGCTGACt < 2:311498/78‑1 (MQ=255) cgcAAGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCTGACTAcc < 1:311499/81‑1 (MQ=255) aaGGTGGCAAAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCTGACTACCGCa > 1:311532/1‑81 (MQ=255) | CGCTGGTTCCAACGCGTCGGGCGGGTGCGCTGGTGGTCGTTTCTGGCGGCAAATTGTTACTCTATCTGGCGCAAGGTGGC‑AAAAAAATGCTGGTCTGGCAGGAAAAAGAGGAATTACTCGCCCCAGAGGTTTTCCACGCGCTGACTACCGCA > NC_000913/1733420‑1733571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |