| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,407,333 | (A)7→8 | intergenic (‑692/‑228) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,407,326 | 1 | . | A | 100.0% | 35.9 / NA | 11 | intergenic (‑685/‑235) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (7/4); total (7/4) | |||||||||||
TCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGAT‑AAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATA > NC_000913/2407247‑2407391 | tcCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGAt > 2:423120/1‑80 (MQ=255) cGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGAT‑aa < 2:423108/80‑1 (MQ=255) aTGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGAT‑aaaaaa > 2:423137/1‑80 (MQ=255) tcatcatcGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTa < 2:423109/80‑1 (MQ=255) gTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAAt > 2:423126/1‑81 (MQ=255) gTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAAt < 1:423110/81‑1 (MQ=255) tAAATGAGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACCTACAATTAAGAATCAGAACAATTCACtata > 2:423121/1‑80 (MQ=255) aTGAGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATaa > 2:423124/1‑80 (MQ=255) aGGCATTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACAtt > 1:423125/1‑81 (MQ=255) aTTTTCACACAATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCAt > 1:423131/1‑81 (MQ=255) cacacaATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTaa < 2:423111/80‑1 (MQ=255) cacacaATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTa > 1:423130/1‑79 (MQ=255) acacaATTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAg < 1:423112/81‑1 (MQ=255) aTTATCTTACAGATAAAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCata > 2:423127/1‑80 (MQ=255) | TCCGTAATGAGGAAATATCATCATCGCGTTTCATTAGTGAATTCTTAAATGAGGCATTTTCACACAATTATCTTACAGAT‑AAAAAAACCAGACTTACAATTAAGAATCAGAACAATTCACTATATAACATTGCATGTAAAGCATA > NC_000913/2407247‑2407391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |