| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,191,452 | (T)6→7 | coding (821/1065 nt) | yqiI → | putative fimbrial protein YqiI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,191,446 | 1 | . | T | 100.0% | 49.9 / NA | 15 | S272I (AGT→ATT) | yqiI | putative fimbrial protein YqiI |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (9/6); total (9/6) | |||||||||||
TGAGTGAGACGTTTAGCGTAGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAG‑TTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCTGCTATTGAAGATATTTCA > NC_000913/3191371‑3191521 | tgagtgagACGTTTAGCGTAGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAG‑ttttt < 2:588828/81‑1 (MQ=255) gaCGTTTAGCGTAGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTa > 1:588858/1‑81 (MQ=255) aGCGTAGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGata < 1:588829/80‑1 (MQ=255) aGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATAtttt > 2:588859/1‑79 (MQ=255) tCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGt > 1:588865/1‑81 (MQ=255) aGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGcc < 2:588830/81‑1 (MQ=255) gATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCa > 1:588857/1‑81 (MQ=255) ccGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCt > 1:588862/1‑81 (MQ=255) cGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTg > 1:588870/1‑81 (MQ=255) ccTGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGt < 1:588831/81‑1 (MQ=255) tGTACTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTaa > 1:588867/1‑81 (MQ=255) cTGAGCAGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATgg < 2:588832/80‑1 (MQ=255) aGCAGTTTAATATTTTAGGGAGTTTTTTTCGCTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCt < 2:588833/80‑1 (MQ=255) aGTTTAATATTTTAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCTGCTa > 2:588854/1‑81 (MQ=255) ttttAGGGAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCTGCTATTGAAGat < 1:588834/80‑1 (MQ=255) gggAGTTTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCTGCTATTGAAGATATTTCa > 1:588872/1‑81 (MQ=255) | TGAGTGAGACGTTTAGCGTAGTCATGACCAAAGATCCGGGTGCGGCCTGTACTGAGCAGTTTAATATTTTAGGGAG‑TTTTTTCACTACGGATATTTTGAGTGATTATAGCCATCTGGATATAGGTAATGGTCTGCTATTGAAGATATTTCA > NC_000913/3191371‑3191521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |