| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,599,709 | (T)5→6 | intergenic (‑51/+220) | livJ ← / ← rpoH | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,599,704 | 1 | . | T | 100.0% | 58.9 / NA | 17 | intergenic (‑46/+225) | livJ/rpoH | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein/RNA polymerase, sigma 32 (sigma H) factor |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (7/10); total (7/10) | |||||||||||
CATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTG‑TTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACA > NC_000913/3599624‑3599771 | cATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGAtgttg > 2:686286/1‑81 (MQ=255) aTCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGAtgttg‑t > 1:686278/1‑81 (MQ=255) cTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTG‑tttt < 1:686251/81‑1 (MQ=255) cTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTG‑ttt < 1:686252/80‑1 (MQ=255) aGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTG‑ttttttcag < 2:686253/81‑5 (MQ=255) aaCGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCAc > 1:686288/1‑81 (MQ=255) cGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACtt > 1:686304/1‑81 (MQ=255) cGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACtt < 2:686254/81‑1 (MQ=255) ttACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTAtt > 1:686297/1‑81 (MQ=255) tACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTAtt < 1:686255/80‑1 (MQ=255) ttCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCa < 2:686256/81‑1 (MQ=255) ccTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGAc > 1:686287/1‑80 (MQ=255) cTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACt < 1:686257/80‑1 (MQ=255) cTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTa > 1:686295/1‑81 (MQ=255) cccATTCTTCTGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCtt > 2:686289/1‑81 (MQ=255) cttctGGTTATTACGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTagca < 1:686258/80‑1 (MQ=255) ttattaCGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActc < 1:686259/81‑1 (MQ=255) attaCGTTGGTTGTGATGGTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActct < 1:686261/80‑1 (MQ=255) attaCGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATActct < 1:686260/80‑1 (MQ=255) aCGTGTGTTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCt < 2:686262/80‑1 (MQ=255) tgtgtTGTGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTaaaa > 2:686294/1‑81 (MQ=255) tgttgtGATGTTGTTTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACa < 1:686263/81‑1 (MQ=255) | CATCCTGCCAGTAACGCTTTACCCTTTATGTTCATCCTGAGAATCCCCATTCTTCTGGTTATTACGTGTGTTGTGATGTTG‑TTTTTCAGCACTTTATTTCGTTTTATGCATGACTACCCGTGCTTTAGCAGCATACTCTGCTAAAACA > NC_000913/3599624‑3599771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |