| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,479,972 | (T)8→9 | coding (243/1197 nt) | yjgN → | conserved inner membrane protein YjgN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,479,964 | 1 | . | T | 88.2% | 50.8 / 0.8 | 17 | coding (235/1197 nt) | yjgN | conserved inner membrane protein YjgN |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base T (10/5); total (12/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
TCTTTATGCTAATATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑TTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGATATGCCGCTTGTTGGTTGTG > NC_000913/4479888‑4480033 | tCTTTATGCTAATATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑ttt < 1:904795/80‑1 (MQ=255) tATGCTAATATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑tttttt < 2:904796/79‑1 (MQ=255) aTGCTAATATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑tttttttt < 2:904797/80‑1 (MQ=255) aaTATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑TTTTTTTTTgtttt > 2:904833/1‑81 (MQ=255) atatGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑TTTTTTTTTgttttt > 1:904818/1‑81 (MQ=255) atGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGttttttt > 2:904819/1‑81 (MQ=255) tGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTc > 2:904839/1‑81 (MQ=255) aCGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGc > 2:904812/1‑80 (MQ=255) cGGACAACGATTTTCTTATGGAATTACCGGTGGGATTGTTTCTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCaa > 1:904825/1‑81 (MQ=255) gACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATc > 2:904823/1‑81 (MQ=255) cGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAAt < 1:904799/81‑1 (MQ=255) cGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAAt < 1:904798/81‑1 (MQ=255) aTGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAgtgt > 1:904840/1‑79 (MQ=255) aTGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAgtg < 2:904800/78‑1 (MQ=255) aaTTACCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTTTATTTCGCAATCTTAATGACAGTGTcag > 2:904827/1‑78 (MQ=255) aCCGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGatat > 1:904829/1‑81 (MQ=255) ccGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGatat < 2:904801/80‑1 (MQ=255) cGGTGGGAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGATATGc > 2:904834/1‑81 (MQ=255) ggAATGTTTTTGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGATATGCCGCtt < 1:904802/81‑1 (MQ=255) tGTTAGTTGTCTTTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGATATGCCGCTTGTTGGTtgtg > 1:904838/1‑81 (MQ=255) | TCTTTATGCTAATATGGAAGTTAACGGACAACGATTTTCTTATGGAATTACCGGTGGGAATGTTTTTGTTAGTTGTC‑TTTTTTTTGTTTTTTTCTATTTCGCAATCTTAATGACAGTGTCAGCAGATATGCCGCTTGTTGGTTGTG > NC_000913/4479888‑4480033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |