| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,604,045 | (A)7→8 | coding (569/726 nt) | yjjQ → | DNA‑binding transcriptional repressor YjjQ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,038 | 1 | . | A | 95.7% | 72.8 / ‑3.9 | 24 | Q188K (CAA→AAA) | yjjQ | DNA‑binding transcriptional repressor YjjQ |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base A (13/9); minor base G (0/1); total (14/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
GCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CC‑AAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG > NC_000913/4603962‑4604109 | gCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CC‑aaa > 1:931943/1‑80 (MQ=255) gCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CC‑aaaaaaa < 1:931897/81‑1 (MQ=255) aTTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CC‑aaaaaaaa > 2:931933/1‑78 (MQ=255) aGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTg > 2:931930/1‑81 (MQ=255) ggTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGc < 2:931898/81‑1 (MQ=255) aaGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATg < 2:931899/81‑1 (MQ=255) ggCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACt < 2:931900/81‑1 (MQ=255) aaCCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAAt < 1:931901/81‑1 (MQ=255) aaCCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAAt < 2:931902/81‑1 (MQ=255) aCCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGCTCA‑AAAAAAACAGTGCGATGCGTCGACTGGCAAtt > 2:931952/1‑81 (MQ=255) ccAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTc < 2:931903/81‑1 (MQ=255) cAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTca < 2:931904/81‑1 (MQ=255) cAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTca > 2:931931/1‑81 (MQ=255) aGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCGAAAAAAACAGTGCGATGCGTCGACTGGCAATTcac < 2:931905/81‑1 (MQ=255) gCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCaa > 1:931932/1‑81 (MQ=255) cTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAAc < 2:931906/81‑1 (MQ=255) tGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGa > 2:931941/1‑80 (MQ=255) aaGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTa > 2:931937/1‑81 (MQ=255) aGAAAAGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTa < 1:931907/80‑1 (MQ=255) aaaaGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATg > 1:931951/1‑80 (MQ=255) aaGTAATAAAACTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCAt > 2:931940/1‑81 (MQ=255) aaaaCTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATaaa > 1:931945/1‑81 (MQ=255) aaaCTATCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATaaa > 2:931948/1‑80 (MQ=255) aTCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgc > 1:931950/1‑81 (MQ=255) tCAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgcg > 2:931957/1‑81 (MQ=255) cAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgcg > 1:931946/1‑80 (MQ=255) cAGCGC‑CCAAAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAgcgcg > 1:931947/1‑80 (MQ=255) | GCGGCTATTAGGTAAAGGATGGGGCATCAACCAGATAGCTTCATTGCTTAAGAAAAGTAATAAAACTATCAGCGC‑CC‑AAAAAAACAGTGCGATGCGTCGACTGGCAATTCACAGCAACGCTGAAATGTATGCATGGATAAATAGCGCG > NC_000913/4603962‑4604109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |