| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 469,571 | (A)8→9 | coding (701/1773 nt) | mdlA → | ABC transporter family protein MdlA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 469,563 | 1 | . | A | 93.9% | 113.0 / 0.2 | 33 | coding (693/1773 nt) | mdlA | ABC transporter family protein MdlA |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base A (17/14); total (18/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
TCCGCATGATCAAAGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGC‑AAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATGGCGA > NC_000913/469490‑469636 | tCCGCATGATCAAAGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGC‑aaaaaaa < 1:102927/81‑1 (MQ=255) cGCATGATCAAAGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGC‑aaaaaaaaa > 1:102977/1‑80 (MQ=255) aaaGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGt < 2:102928/81‑1 (MQ=255) aaGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTg > 1:102976/1‑81 (MQ=255) gCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGgc < 2:102929/81‑1 (MQ=255) ccTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGgcg > 2:102967/1‑81 (MQ=255) ttGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGcgcg > 2:102962/1‑80 (MQ=255) tGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGcgcg < 2:102930/79‑1 (MQ=255) tGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGt < 1:102931/80‑1 (MQ=255) ggTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTAt > 2:102986/1‑81 (MQ=255) tGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGAt > 1:102973/1‑81 (MQ=255) aGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTc < 1:102932/81‑1 (MQ=255) aTCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGt < 2:102933/81‑1 (MQ=255) tCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGtt > 1:102965/1‑81 (MQ=255) gCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGttt < 1:102936/80‑1 (MQ=255) gCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTc < 2:102934/81‑1 (MQ=255) gCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTc > 2:102972/1‑81 (MQ=255) gCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTc < 1:102935/81‑1 (MQ=255) aGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTcgac < 1:102937/81‑1 (MQ=255) ggCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTcgacccga > 2:102975/1‑81 (MQ=255) ggCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTcgacccg < 1:102938/80‑1 (MQ=255) gCGTTATTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTcgacccgac > 1:102974/1‑81 (MQ=255) aTTTGCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATc > 2:102964/1‑80 (MQ=255) gCCGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTatat > 2:102980/1‑81 (MQ=255) ccGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATc > 1:102982/1‑81 (MQ=255) ccGCGGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATc > 2:102981/1‑81 (MQ=255) cgcgGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATcg > 1:102963/1‑81 (MQ=255) gcgGATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATcgc < 2:102939/81‑1 (MQ=255) ggATGCCGAAGATACCGGC‑AAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGAt > 1:102970/1‑81 (MQ=255) gATGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGAt > 1:102969/1‑81 (MQ=255) aTGCCGAAGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGAtt > 1:102968/1‑81 (MQ=255) aaGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATg < 2:102941/81‑1 (MQ=255) aaGATACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATg < 2:102940/81‑1 (MQ=255) aTACCGGCAAAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATGGc > 1:102993/1‑80 (MQ=255) aTACCGGC‑AAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATGGCGa < 1:102942/81‑1 (MQ=255) | TCCGCATGATCAAAGCCTTTGGTCTGGAAGATCGCCAGTCGGCGTTATTTGCCGCGGATGCCGAAGATACCGGC‑AAAAAAAACATGCGGGTGGCGCGTATTGATGCTCGTTTCGACCCGACCATCTATATCGCGATTGGTATGGCGA > NC_000913/469490‑469636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |