| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 30 (0.930) | 26/160 | 0.3 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 27 (0.840) | 21/160 | 0.5 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGCC > NC_000913/2737039‑2737198 | aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccg < 1:213428‑M2/1‑1 (MQ=255)aaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGa < 2:682370‑M2/2‑1 (MQ=255) aaaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCa > 2:682209/1‑81 (MQ=255) aaaGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCAc < 1:489993/81‑1 (MQ=255) aaaGATTCGTTGACAAAAA‑TTAAAAAATTATTAGATTTTCATTACACATTTTTACATCAGGAAAGGGAATCTTAATTCAcg > 2:682205/1‑80 (MQ=255) tggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCa < 2:63100‑M2/10‑1 (MQ=255) tggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCa < 2:347784‑M2/10‑1 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCAcc > 2:490017‑M2/71‑79 (MQ=255) ggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCAcc > 1:490018‑M2/71‑79 (MQ=255) gctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGAc < 1:347782‑M2/14‑1 (MQ=255) ttGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgct < 2:347865‑M2/81‑10 (MQ=255) catgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGa < 1:4269‑M2/18‑1 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGa > 1:490025‑M2/61‑81 (MQ=255) caaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACa < 1:682305‑M2/23‑1 (MQ=255) agtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAaga < 1:63123‑M2/26‑1 (MQ=255) gACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttact < 1:682210‑M2/80‑21 (MQ=255) catcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAgg > 2:490035‑M2/53‑80 (MQ=255) aCAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactg > 1:489994‑M2/1‑59 (MQ=255) aaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatt < 1:4376‑M2/79‑25 (MQ=255) aaTTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatt < 1:347866‑M2/79‑25 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAtt < 2:213392‑M2/35‑1 (MQ=255) cattatctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAAttt < 1:682327‑M2/36‑1 (MQ=255) tATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtg < 1:347861‑M2/81‑30 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGa > 1:490023‑M2/42‑81 (MQ=255) agaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatg > 2:489995‑M2/1‑48 (MQ=255) agaTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtat < 1:66238‑M2/80‑33 (MQ=255) aTTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgat > 2:489996‑M2/1‑46 (MQ=255) gaacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAAt > 2:490021‑M2/38‑81 (MQ=255) aacataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGAc < 1:66148‑M2/41‑1 (MQ=255) tcatcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtg < 2:58435‑M2/81‑40 (MQ=255) tcatcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtg < 1:832566‑M2/81‑40 (MQ=255) tcatcaCACATTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggt > 1:489997‑M2/1‑42 (MQ=255) ataaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAAc < 2:58329‑M2/48‑1 (MQ=255) taaaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACa > 1:490027‑M2/33‑81 (MQ=255) aaacactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACAt < 2:58328‑M2/50‑1 (MQ=255) acacaTTTTGACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgttttt > 1:489998‑M2/1‑37 (MQ=255) acactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTAc > 1:490019‑M2/29‑81 (MQ=255) cactatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTAcc < 1:63114‑M2/54‑1 (MQ=255) actatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTAc > 1:490024‑M2/27‑79 (MQ=255) ctatcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAg < 2:347765‑M2/56‑1 (MQ=255) tcaataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGca < 1:63095‑M2/58‑1 (MQ=255) gACATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc < 2:4336‑M2/81‑54 (MQ=255) ataagttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGcaaac > 1:490022‑M2/20‑80 (MQ=255) aCATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc < 2:213318‑M2/80‑54 (MQ=255) aCATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc < 1:682236‑M2/80‑54 (MQ=255) aCATCAGGAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:489999‑M2/1‑27 (MQ=255) gttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATg > 1:490031‑M2/16‑81 (MQ=255) ttggagtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATg > 2:490028‑M2/15‑80 (MQ=255) ggAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc > 1:490000‑M2/1‑21 (MQ=255) gAACGGTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatagtgtttttgaggtgctccagtggct > 2:490001‑M2/1‑20 (MQ=255) agtcattaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAAt < 1:4252‑M2/71‑1 (MQ=255) ggTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg < 2:4368‑M2/81‑66 (MQ=255) ggTATGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg < 2:4350‑M2/81‑66 (MQ=255) attaccGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACt > 2:490059‑M2/7‑81 (MQ=255) tGCTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttc < 1:347854‑M2/81‑70 (MQ=255) cTGAATTCACggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 2:489973‑M2/1‑10 (MQ=255) gAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGcc < 1:682325/81‑1 (MQ=255) gAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGc > 2:490026/1‑80 (MQ=255) | CACAAAAAAGATTCGTTGACAAAAAGTGACAAAATTATGAGATTTTCATCACACATTTTGACATCAGGAACGGTATGCTGAATTCACCAAGACGGGAAGACAAGAGGTAAAATTTATGACAATGAACATTACCAGCAAACAAATGGAAATTACTCCGGCC > NC_000913/2737039‑2737198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |