| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,125,546 | A→G | intergenic (‑220/‑16) | mdtH ← / → rimJ | multidrug efflux pump MdtH/ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,125,546 | 0 | A | G | 100.0% | 51.6 / NA | 15 | intergenic (‑220/‑16) | mdtH/rimJ | multidrug efflux pump MdtH/ribosomal‑protein‑S5‑alanine N‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/0); total (15/0) | |||||||||||
AAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAC > NC_000913/1125468‑1125609 | aaaTGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAg > 2:225412/1‑81 (MQ=255) cATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAg > 1:225407/1‑81 (MQ=255) cATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAg > 2:225404/1‑81 (MQ=255) ggACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGta > 1:225419/1‑78 (MQ=255) tttCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGt > 1:225417/1‑81 (MQ=255) tttCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGt > 2:225418/1‑81 (MQ=255) tCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCg > 1:225410/1‑81 (MQ=255) gcgcAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAAc > 1:225421/1‑81 (MQ=255) aGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGc > 2:225413/1‑81 (MQ=255) ggTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGc > 1:225423/1‑80 (MQ=255) gTAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGt > 1:225415/1‑81 (MQ=255) tAATACTTACAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTg > 2:225409/1‑81 (MQ=255) aCAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAAc > 1:225411/1‑81 (MQ=255) aCAGCGTATTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAAc > 1:225416/1‑81 (MQ=255) aTTAAAGACGTTACGGGGAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAc > 2:225422/1‑81 (MQ=255) | AAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAC > NC_000913/1125468‑1125609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |