| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,220,468 | T→C | pseudogene (868/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,220,468 | 0 | T | C | 100.0% | 45.2 / NA | 14 | pseudogene (868/2648 nt) | ycgH | putative transporter component, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/4); total (10/4) | |||||||||||
TCGACAAGGTAACATTGATATAAAAAATAGTTCTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATATACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCAAAACAAGATAAAGGAATATCAATTGATGCATC > NC_000913/1220395‑1220544 | tCGACAAGGTAACATTGATATAAAAAATAGTTCTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACAAtgg > 2:240109/1‑81 (MQ=255) aaCATTGATATAAAAAATAGTTCTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTa > 2:240110/1‑81 (MQ=255) aTAGTTCTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACGATGGTGGAGAGTTATTTTTTTCCAATGTCa < 1:240088/81‑1 (MQ=255) cTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCgg > 2:240105/1‑81 (MQ=255) aTTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTa > 1:240107/1‑81 (MQ=255) ttACAACAACAGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGt < 2:240089/79‑1 (MQ=255) tACAACAACAGGCACTAAAGCCCCTATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTAt > 2:240113/1‑80 (MQ=255) acaacaacaGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATc > 1:240111/1‑80 (MQ=255) caacaacaGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCaa < 2:240090/81‑1 (MQ=255) caacaacaGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCa > 2:240108/1‑80 (MQ=255) acaacaGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCaaaa > 1:240100/1‑81 (MQ=255) aGGCACTAAAGCCCCCATTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCAAAAc > 1:240114/1‑77 (MQ=255) aTTGCAAAAATACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCAAAACAAGATAAAGGAATATCAAtt > 1:240103/1‑81 (MQ=255) aaTACACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCAAAACAAGATAAAGGAATATCAATTGATGCATc < 2:240091/81‑1 (MQ=255) | TCGACAAGGTAACATTGATATAAAAAATAGTTCTATTACAACAACAGGCACTAAAGCCCCCATTGCAAAAATATACAATGGTGGAGAGTTATTTTTTTCCAATGTCACCGCGGTATCAAAACAAGATAAAGGAATATCAATTGATGCATC > NC_000913/1220395‑1220544 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |